Gossypium hirsutum (upland cotton): 107959001
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Entry
107959001 CDS
T04793
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107959001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107959001
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107959001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107959001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107959001
NCBI-ProteinID:
XP_016750435
UniProt:
A0A1U8PGY7
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Position
A05:complement(5717135..5720010)
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AA seq
274 aa
AA seq
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MSILPKGDSVHIREVWNDNLEEEFALIREIVDTYNYVAMDTEFPGVVLRPVGSFKNISDY
NYQTLKDNVDMLKLIQLGLTFSDENGNLPSCGTDSSCIWQFNFCEFNISEDIFASDSIEL
LRQCGIDFKKNNEKGIDVKRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP
DNQARFFDLINMYFPMLYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS
CTFRKLRDNFFNGSTEKYAGVLYGLGVESGQTTN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattttgcccaaaggtgattcagttcatattcgagaagtttggaacgataatcta
gaagaagagtttgctttgatccgtgaaattgttgatacctataattacgtagctatggat
actgagttcccgggtgtagttctacgtcctgttggttctttcaagaatatcagtgattat
aactaccaaactttgaaagataacgtggatatgttgaagttgatccaattagggctcact
ttctcggatgagaatggcaaccttccctcttgtggaactgacagctcttgcatttggcaa
ttcaatttctgcgagttcaacataagcgaagatatctttgctagtgattccattgagttg
ttgcgccagtgcgggattgattttaagaagaacaatgagaagggtattgacgtgaagcgg
ttcggcgagcttctgatgtcttccgggattgtgctgaatgatggtgtgcattgggtaact
tttcatagtggatatgactttgggtatttgctaaagctattgacttgcaggagtttgccc
gataatcaagcgcgattctttgatttgatcaatatgtattttcccatgttgtacgatatc
aagcatatgatgaagttttgcaatagcctgcatggtggtttgaacaagcttgctgagttg
ttggaagtggaaagagttggtgtgtgtcatcaagctggctcggatagtttgctcacatcg
tgcacgtttaggaagttgagagataactttttcaatggctccactgagaaatatgcaggt
gtactgtatggcctgggggtcgaaagtggacagactactaattag
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