Gossypium hirsutum (upland cotton): 107959104
Help
Entry
107959104 CDS
T04793
Name
(RefSeq) U-box domain-containing protein 13 isoform X1
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107959104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107959104
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107959104
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
U-box type E3
107959104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
Neurochondrin
zf-RING_UBOX
MLKL_N
zf-C3HC4_4
zf-Nse
Arm_2
KAP
HEAT_EZ
MCAfunc
zf-C3HC4_2
zf-C3HC4
HEAT_EF3_GNC1
zf-rbx1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
107959104
NCBI-ProteinID:
XP_016750571
UniProt:
A0A1U8PH82
LinkDB
All DBs
Position
A05:9069098..9073917
Genome browser
AA seq
671 aa
AA seq
DB search
MEEEKGELLRSLIDAVNQIAPIGDYRCAVKKEFCNLARRLKLLTPMFEEIRESKEQIPEE
TVKALVSLKEALVSAKELLRFGSEGSKIYLVLERDQIMHKFHEVTARVEQALSGISYENL
DISDEVKEQVELVLAQFRRAKGRVDVPDVELYEDLLSLYNKSNDAAADPDVLRRLAEKLQ
LVGIAELTQESLALHEMVSASCGDPGETFEKMSNLLKIIKDFVQTENPNLDASAREKNLP
SSSGQATTDGNHKTPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEQGHGTCPK
TQQTLSSPALTPNYVLRSLIAQWCEANGIEPPKRPGSSRPNKVTSACSPAERTKIEILLC
KLASSSPEDQRMAAGEIRLLAKRNADNRVAIAEAGAIPLLVTLLSTPDSRTQEHAVTALL
NLSICEENKGSIISFGAVPGIVQVLKKGSMEARENAAAALFSLSVVDENKVTIGASGAIP
PLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALA
ILAILSSHPEGKSAIGAAEAVPVLVDVIGNGSPRNRENAAAVLVHLCAGDQQHLAEAQEL
GVMGPLLDLAQNGTDRGKRKAAQLLERMSRFVEQQKLAQAQAEAHAQQSQSQSQSEIQQP
HPPSVAYTVNR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagaaaggagagctgctgcggagcttgatcgatgcggtgaaccagatagct
ccaatcggcgattacagatgcgccgtgaagaaggagttttgcaatctcgctaggagattg
aagctgttgacgccaatgttcgaggagattagagaaagcaaagagcaaatccccgaagaa
actgttaaagctctggtctcgctgaaagaagctttggtttcagctaaggagttgctcagg
tttggcagtgaaggcagcaagatttacctggttctagagagggatcagattatgcataaa
tttcatgaagtgacagctcgggtggagcaagctttgagtggaatttcgtatgagaatctt
gacatatcagatgaagttaaggaacaggtggagcttgttctagctcagttcaggagagct
aaaggaagggttgatgttccggatgttgaactgtacgaggatctattatcactctacaat
aaaagcaacgatgctgcagcagatccagatgttctaaggagattagccgagaagttacaa
ttggttgggatagctgaacttacgcaagaatcactagctctacatgagatggtttctgcc
agttgtggagatcctggggaaacatttgaaaagatgtcaaacttactaaagataatcaag
gattttgtacagacagaaaatcctaatttggatgcttctgcaagggaaaagaatcttcct
agtagtagtgggcaagcaaccactgatggaaatcacaagactccagttataccagatgat
tttcgctgtccaatatccctggagttgatgaaggaccctgtcattgtttccacagggcag
acttatgaacgttcttgcattgagaaatggctggagcaaggtcacggaacatgtccaaag
acacaacagaccctcagtagccctgctcttacgcccaattatgtattgcgtagtctaata
gctcaatggtgtgaggcaaatggcattgagccgcctaaaagacccggtagttctcgaccc
aataaagtcacatctgcctgctcacccgctgaacgtaccaagattgaaattctcctctgt
aagcttgcatccagcagtcctgaagatcaaagaatggctgcaggtgaaatccgtcttctt
gccaaacgaaatgcagataatcgtgtggcaattgctgaagctggggccatacctctcctt
gtgaccctcctttcgacacctgattcacggacccaagaacatgctgtaacggcactcctt
aacctttccatttgtgaagagaacaaaggaagtatcatatcttttggagcagttcccggt
atagtccaggtgcttaagaagggaagcatggaagctagagagaatgcagcagctgctctc
ttcagcctctcagtagtggatgaaaataaggtgacaattggtgcctcaggagcaattcct
cccctagtgacattgctaagtgaaggcacacaaagggggaaaaaagatgcagcaacagca
ctctttaatttgtgcatttaccaagggaacaagggaaaagcagtgagagccggagttgtc
ccaacattaatgcgtttgttgacagaacctggaggaggaatggtggatgaggcattagcc
atacttgcaatactctctagccacccggaaggtaagtctgccataggagcagcagaggca
gtgccagttttggtagatgttattggtaatggatctcctaggaatagggagaatgcagct
gcggttttggtgcacctctgtgccggagaccaacagcatttagcagaggcccaggaacta
ggagtgatgggtcctttgttggacttggctcaaaatggtacagatagggggaagcggaag
gctgctcaattgcttgagcgcatgagcaggtttgttgagcagcaaaagcttgcacaggcg
caagctgaggcccatgctcaacagtcccagtctcagtctcagtctgagattcaacaacca
cacccaccctctgtggcatacactgttaatagatga
DBGET
integrated database retrieval system
