Gossypium hirsutum (upland cotton): 107959237
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Entry
107959237 CDS
T04793
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107959237
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ghi00535
]
107959237
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
107959237
Meiosis-specific proteins
Cohesin complex and associated proteins
107959237
Proteoglycans [BR:
ghi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107959237
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
ATG14
Motif
Other DBs
NCBI-GeneID:
107959237
NCBI-ProteinID:
XP_016750731
UniProt:
A0A1U8PHN8
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Position
A05:complement(7404739..7420069)
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AA seq
1199 aa
AA seq
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MFIKQIIIEGFKSYREQIATEPFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED
RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELQDARRKLE
EVEEARTKVSEKSSEMYNAVLDSHERFKDLDKKSKDLTKELQGLNKDKEALETKQAEAIK
KQTALELDVKDLEERMSGNMQAKEDAVKQLRMLQKEIKESTEELNRIKPLYDNQLKKEEN
ITKGIMEREKQLSILYQKQGRATQFSSKAARDKWLQKEIDDLEQVLYSNSSQEQKLQEEI
FGLNEELERLDESIVRRKTEIKELESSIAKSRFNSQKTERDKLQDERKSLWEKESKLSAE
IDKLKSEVEKAEKSLDHATPGDVRRGLNSIRKICREYNIGGVFGPIIELLNCDEKFFTAV
EVTAGNSLFHVVVEKDEISTQIIRHLNSLKGGRVTFIPLNRVKAPHVTYPQSSDVIPLLK
KLNFSSKYAPAFAQVFGRTVICRDIDVATRVARTDGLDCITLEGDQVSKKGGMTGGFYDY
RRSKLKFMNIIMQNTMSINKKEEELKRIGLELQKLEQKITAFVTEQQQLDAKRVLDKSVL
EQHKQDIANANKQKQYTSKALENKRKSLADVQMQIDQLRASMAMKRAEMGTELIDHLTPE
EKDLLSRLNPEIADLKEQLINCRSDRIETESRKAELETNLTTNLKRRKQELEAIISAAEA
DALLDEAESKRQELMDAKLLVEDATQQLKRVSDRIDELTKQLRGIKDEKNNLKGLEDAYE
RTLQDEAKELEQLLSKRSNLLAKQEEYSKKIRELGPLSSDAFETYKRKQIKELQKMLHRC
NEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELDSGDEKIKELIEVLDQRKDESIERT
FKGVARHFREVFSELVQGGHGHLVMMKKKDGDDDDDDDGPREADLEGRVEKYIGVKVKVS
FTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIR
RLADMANTQFITTTFRPELVKVADHIYGVTHKNRVSRVNVVSKEDALDFIEHDQSHNAE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgtttataaaacagatcattatcgaagggttcaaaagctacagggagcagattgctacc
gagcctttcagcccaaaagttaattgtgttgttggtgctaatggttctggcaaaacaaat
tttttccatgcaattcgttttgttttgagcgacctcttccagaatctgcgcagtgaagat
aggcatgcactactacatgaaggtgcaggacaccaggttttgtctgcatttgtggagatt
gtttttgataattctgacaatcgtatcccggttgacaaggaggaggtacgcctacgtcga
acaattgggttgaagaaggatgagtatttcttggatggaaagcatattacgaaaactgaa
gttatgaatttactggaaagcgctgggttctctcgttctaatccttattatgttgtgcaa
caaggcaagatagcatcattaacgttgatgaaagattctgagaggctggacttgctgaaa
gaaattggtggtactcgagtttatgaagagagacgccgtgaaagcttgaaaatcatgcag
gaaactggcaataaaaggaagcaaataatacaagttgttcagtacttagatgagagacta
aaagaactggatgaagagaaagaagagcttagaaaatatcagcagcttgacaagcagaga
aagtctctagaatacaccatttatgataaagaacttcaagatgctcggcgtaaattggaa
gaggtagaagaagctcgaaccaaggtttctgaaaaatcatctgagatgtataatgctgtg
ctggattcccatgaaaggttcaaggacttagacaagaagtctaaagatctaacaaaggag
cttcaaggtttaaacaaagataaagaagccttagaaactaaacaagcggaagctataaag
aagcagactgcgctagagcttgatgtaaaagatttagaagagaggatgtctgggaacatg
caagctaaagaggatgcagtcaaacagcttcgaatgctgcagaaggagataaaggagtca
acagaggagcttaacaggattaaaccactctatgacaaccaattaaaaaaggaggagaat
ataacaaaagggattatggagcgtgaaaagcaacttagcattctttatcagaaacaaggt
cgtgctactcagttttccagtaaagctgctcgagataaatggcttcaaaaggaaattgat
gatttggaacaagtgctttattcaaattcatcgcaggagcaaaaactccaggaggaaatt
tttgggcttaatgaggaattggagcgattggatgaatccattgtaagacgcaaaactgaa
atcaaagagttggaatcttcaattgccaagtcccggtttaattctcagaaaactgaaaga
gataagctgcaggatgaaaggaagtccttatgggaaaaagaaagtaaactttctgctgaa
attgataagctgaaatcagaagttgagaaagcagaaaagagccttgatcatgcaactcct
ggagatgtaagaagagggctgaattctattaggaagatatgcagagaatataatataggt
ggagtgtttggtccaattattgagctgcttaattgtgatgagaagttttttactgcagtt
gaagtaactgctggaaacagcttgtttcacgtggttgttgaaaaggatgagatatcaacc
cagataattcgacatcttaattcactgaaaggaggacgtgttacttttataccactaaac
cgtgtgaaggctccacatgtcacatatccacaaagttctgacgtgatacctctgttaaag
aaattgaacttttcttccaaatatgctccagcatttgcacaggtgtttggtagaacagta
atctgccgagatatagatgtggctacaagagttgctcgaactgatggtctggattgcata
actttggaaggtgatcaagttagcaagaagggtggtatgactgggggattttatgattat
aggcgctcaaaattaaagttcatgaatataatcatgcaaaacacgatgtctattaataag
aaggaagaagaactgaaaagaatcggcttagagcttcaaaagttagagcagaaaatcaca
gcttttgtcactgaacagcagcaacttgatgctaagcgggttcttgacaaatcagtgctg
gagcagcataagcaggacattgctaatgctaataagcaaaaacagtatacatctaaagct
cttgaaaataagagaaaatcacttgcagatgtgcagatgcaaattgatcagcttagagct
agtatggcaatgaaacgtgctgaaatgggcacagagcttattgatcacttaacaccagaa
gagaaggaccttttgtcgagattgaatcctgagatagcagatcttaaagagcaacttatc
aattgcaggagtgatcgtattgagactgaatcaagaaaagcagaacttgagacgaatctc
acaacaaaccttaagaggcggaagcaagagttggaagcaataatatctgcagcagaggct
gatgcattgcttgatgaagctgaatcaaagaggcaggaattaatggatgctaaattgttg
gttgaagatgctacacagcaacttaaaagagtttctgatagaattgatgagctaacaaag
caacttaggggaatcaaggatgaaaagaacaatctgaagggattggaagatgcctatgag
aggacacttcaggatgaagcaaaagagttggagcaattgctaagtaaaaggagtaatctt
cttgctaagcaggaggagtattccaagaaaataagggagttgggccctttgtcatcagac
gcttttgaaacgtacaagcgaaagcagataaaagagttgcagaaaatgcttcataggtgc
aatgagcagctgcaacagttcagccatgtaaacaagaaagcacttgaccagtatgtaaat
ttcactgagcaaagagaagaactgcagaaaaggcaggcagagctggattcaggtgatgag
aaaattaaagaacttatagaagttctagatcagcgcaaggatgagtcaatagaacgaact
ttcaaaggtgttgcccggcactttagagaagtattctcagaacttgtacaaggtggtcat
ggtcatttggtgatgatgaagaaaaaggatggtgatgatgatgatgatgatgatggacct
cgagaggcagatttggagggaagagttgagaaatacattggtgtgaaagtgaaggtttcc
tttaccgggcaaggtgagacacaatcaatgaagcaattatcaggaggacagaaaactgtt
gtagcccttacattaattttcgcgattcaacgatgtgatccggctccattttatcttttt
gatgagatagatgcagctctggatcctcagtaccggactgcagttggaaatatgattcgt
cgactggcagacatggcaaatacacaattcataaccaccacatttcggccagagcttgtc
aaagttgctgatcatatatatggtgtgacacataaaaacagggtgagccgtgttaatgtt
gtctccaaggaagatgcgttagattttattgagcacgatcagtctcacaatgctgaataa
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integrated database retrieval system
