Gossypium hirsutum (upland cotton): 107959292
Help
Entry
107959292 CDS
T04793
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107959292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107959292
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107959292
mRNA cycle factors
Common to processing body (P body) and stress granule
107959292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107959292
NCBI-ProteinID:
XP_016750800
UniProt:
A0A1U8PHZ7
LinkDB
All DBs
Position
A05:6878095..6884457
Genome browser
AA seq
986 aa
AA seq
DB search
MMIVQIDKMSAPSREHAQRLYERNVELEANRRRSAQARVPSDPSAWQQMRENYEAIILED
RAFSEQHNIEYALWQLHYKRIEELRAHHSAALASSGSNTSQGVQVPPRPDRLTKIRLQFK
TFLSEATGFYHDLILKIRAKYGLPFGYFSDDSESQIIMGNDGKKSADIKKGLVSCHRCLI
YLGDLARYKGLYGDGDSKSREYAAASSYYLQAASIWPSSGNPHHQLAILVSYSGDELVAI
YRYFRSLAVDNPFSTARDNLIVAFEKRLQNRHNYSQLHGDVKTPFKEPAVRLSGKGRGKL
EAKLASKDANMEPNPSKEKVSGVQDIFKSFCIRFVRLNGILFTRTSLETFADVLTRVSRD
LCELLSSGPEEELNFGTGAAENALLLVRLVAILIFTVHNLKRESEGQTYAEIVQRAALLQ
NAFTAVFELIGLVVERCSQLRDVSSSYTLPSILVFLEWLACCPDIAAAGSDVDEKQSITR
SLFWKHCVSLLNKILSIRPRCMDDDEEEACFFNMSSYEGETENRLALWEDFELRGFLPLA
PAHSILDFSRKCSFVSDGNKERKARVKRILAAGKALANVIRVDQKTVCFDSKAKKFLIGV
EPFADVTVSAATPVVTNSEVHETPSENITNIGNVQPIPQPRTVGEEDDDDDEVIVFQPAM
SEKRTEVMDHNHPPSDILKLDQSSSAGDLKFYGSTMPAPYDSLHQHDTFDASHPLPASVG
NFLPQHLQPVQMHGSRWSVEEATSLANSLKSLKILENGHLTKSQMEDNLGFSHPAAHSVA
IQQPINVHASGMYCSRTKISETVMPSRINAIVSSEVTGDDLAARTTSSSLVGMQKNPISR
PVRHLGPPPGFSPVPLKALNESVSAVELRNPLMDDYSWLDGHQLASSLEGSTRESSLYYV
SHADPQHVNNRSNGFTGTVSFPFPGKQAPAVQFHMEKDKGWQDYNTLEHHHEQKLHQRQL
VNGNQQFSLLPGQYPGQSAWTGPYFV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtgcagattgataaaatgtctgctccatccagggagcatgcacagcgtctt
tatgaaaggaatgtagagttggaagctaatcgtaggagatcagctcaggcacgggtacct
tcagatcccagtgcctggcagcagatgcgtgagaactatgaggcaataattcttgaggac
cgtgctttttctgagcagcacaatattgaatatgctttatggcagttacattacaagcgg
attgaggaattaagggcacatcatagtgctgctttagcatcttcaggatcgaacacatct
cagggtgtgcaagttcctcctcgacctgacaggcttacaaaaataagactgcagtttaag
actttcctttcggaagcaacaggattttaccatgatctgattttgaaaatcagagcaaag
tatggactcccatttgggtatttttctgatgattcagaaagccaaattattatgggcaat
gatgggaagaaatctgccgatataaaaaagggtttggtgtcttgtcaccgttgtttgata
tacttgggagacttagcgcggtacaaaggactatatggagatggagattctaaatcacgt
gagtatgcagctgcttcgagttactacttgcaagctgcatcaatttggccatcaagtggg
aatccgcatcatcagcttgctatattagtttcatattcaggagatgagctggtggccatt
tatcggtatttccggagtttagctgttgataaccctttttcaactgcaagggataacttg
attgtagcatttgagaagcgtttgcagaatcgccataattactcgcagctccatggggat
gttaagacccccttcaaggagcctgctgtgcggctatcgggaaaaggcagggggaaattg
gaagcgaagcttgcatctaaagatgccaacatggaaccaaacccttctaaggagaaagta
tctggtgtccaggatatttttaagtccttttgcattcgatttgtgcgtcttaatggcatt
ctttttacacgcacaagcctggagacttttgcagatgttcttactcgggttagccgtgat
ttatgtgaacttctctcttctgggccagaagaggaactgaattttggcacaggtgctgct
gagaatgcacttctccttgttaggctggttgccattctcatatttacagttcacaatctg
aagagggagagtgaaggtcaaacatatgctgaaattgtacagcgtgctgccctgcttcag
aatgcattcactgctgtttttgagttgataggacttgtagtagagagatgttcacagctc
cgggatgtttcttcaagctacactttaccttctattttggtttttttagaatggctagct
tgttgccctgatattgcagctgctggtagtgatgttgatgagaaacagtcaattactaga
tctcttttctggaaacattgtgtgtcattgctgaataagattttgtcaattaggccaagg
tgcatggatgatgatgaagaggaggcctgctttttcaatatgagtagctatgaaggagag
actgaaaaccgtcttgcattgtgggaggactttgagttgcgagggttcttgcctcttgct
cctgcacactccattttggacttctcaaggaaatgttcctttgtaagcgatggcaataag
gaaaggaaagcccgtgtcaagagaattttggccgctgggaaggctctagctaatgtcata
agggttgatcagaaaactgtttgttttgattcaaaagctaagaaatttcttattggtgtt
gagccatttgcagatgtcacagtgagcgccgctacccctgtggtaacgaatagtgaggtg
catgaaaccccctctgagaatataactaatattggaaatgttcagccaatcccacaacct
agaacggttggtgaagaagatgacgatgatgatgaagtgattgttttccagccggctatg
agtgagaagagaactgaggtgatggatcacaatcatcccccctctgatattttgaagctt
gatcaaagtagttctgctggtgatctcaaattttatggcagcactatgcctgctccttat
gatagtcttcaccagcatgacacatttgatgctagtcatccactgcctgcatctgttggt
aattttctccctcagcatctgcagcctgttcagatgcatggatctaggtggtcagtagaa
gaagctacttctctggctaatagcttaaaaagtttgaaaatattggagaatgggcattta
actaagagtcagatggaagataatttaggcttttctcatcctgctgctcattcagttgct
atccaacagcccatcaatgttcatgctagtggtatgtactgcagtcggacaaaaatttca
gaaactgtgatgccatccagaattaatgctattgtgtcatctgaagttactggtgatgat
ttggctgctagaactacctcatcttcactagttggaatgcagaagaatcctattagccgc
ccggtcaggcatcttggtccgccaccaggttttagccctgttcctctaaaggctctgaat
gaatctgtttctgctgtagaattgaggaaccctctgatggatgattatagttggttggat
ggacatcagttggcatcatcattagaaggctctacgcgtgagagttctctctattatgta
tctcatgctgatccccaacatgtaaataacagaagcaatggcttcactggaacggtaagc
tttcctttccctggaaagcaagctcctgcagtgcagtttcatatggaaaaggataaaggc
tggcaggactacaatactcttgagcatcatcatgaacagaaattgcatcaacggcaactt
gtgaatgggaaccagcagtttagcttactgcctgggcagtatccaggacaatcagcctgg
acaggtccttattttgtgtga
DBGET
integrated database retrieval system
