KEGG   Gossypium hirsutum (upland cotton): 107959376
Entry
107959376         CDS       T04793                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03410  Base excision repair
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107959376
   03410 Base excision repair
    107959376
   03420 Nucleotide excision repair
    107959376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    107959376
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107959376
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     107959376
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    107959376
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      107959376
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 107959376
NCBI-ProteinID: XP_016750910
UniProt: A0A1U8PIB3
LinkDB
Position
A05:complement(8031020..8050623)
AA seq 2204 aa
MNGGDNRRPDRRDLWRSKKQKLIRSAEEELESKLGFDLFTEGEKRLGWLLTFASSSLEDS
DAGKVYSCVDLYFVSQDGSCFKSKFKFRPYFYAAAKNKAEMDVEAYLRRRYETQIAGIEI
VEKEDLDLKNHLSGLHKRYLKISFDTVQQLMDVKRDLVHVVERNRTKFDAAEAYESILMG
NREQRPLDLLDLLVDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSTGVTLEKRTDLLQRA
EVRVCAFDIETTKLPLKFPDAEYDSIMMISYMVDGQGYLIINRECVGQDIEGLEYTPKPE
FQGFFKVTNVKNEIELLRLWFTHMQEVKPGIFVTYNGDYFDWPFIEKRAAYHGFKMSDEI
GFRCDENQGECQAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVQ
FAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLM
VQAYKANVICPNKHQSDAEKFYKNHLLESETYIGGHVECLESGVFRSDLPTSFKLNPSGY
EQLISNLDRDLQYAIRVEGKMDLESVLNYDEVKNEIMEKLVKLRDEPIREECPLIYHLDV
AAMYPNIILTNRLQPPSIVTDEVCTACDFNRPDKTCLRKLEWVWRGEIFMAKKSDYYHLK
KQIESEFFDGTDNQLSKSFLDLPKLEQQSRLKDRLKKYCQKVYRRVLDKPVTELREAGIC
MRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKAGGNPMKIQEAQDMVVLYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCA
LPGSFPENFTFKTNDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVNPVNKTYTTHSECS
IEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAE
LFDKFLNGSTLEECYSAVAVVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGE
QKSCAVTTARRLADFLGDAMVKDKGLHCQYIVACEPRGTPVSERAIPVAIFETDPEIMKF
YLRKWCKTSSDVGIRSIVDWLYYKQRLSSAIQKIITIPAAMQKVTNPVPRVAHPDWLHKR
VREKEDKFRQRKLVDIFGSSVRNDSVKKANDAVLTTDVVGDLEDFQNKRGSKKGPVPIVR
SYEVNKDQGPIEAAVQGNTMQHQTDHRGSEQNLSSILQPNVQSTENIDRNVDYQGWLELK
KRKWKDNLEIRKRQRLSNLRTSHHVSHNSEILGAMENHKDASGRAGVGSYFRRHEVSLTN
SYWQIMQLVPGSQNGQFFAWVVVEGIMLKVPITVPKVFYLNSKATISENFPGRRVNKVLP
HGRQSYNLFEVIIDEDQFRRESKKLAALLADPEIEGIYERKILLEFNAILQLGCVCKVDK
TAKKRNAQDGWRLSELHMKTTTECAYLEQAIPFFYLYHSICEGRAIYAAYFSSSGAVFVV
VVNPHHESESISPYILEKYFREACQALSIEPPTRNGISFKVNYVEHVKDAEKNLQRAISE
HRHEHQGPILAVIECPNTQMMKSGIQALEDFPCVSIPSNARDNDYQLLVWQQTAAKIGMQ
RCSASSQWLSERISLSRYAHVPLGNFQSDWLLYTADVFYSRALRDQQQVLWISDDGVPDL
GGIGEEDTCFADEVCQPVITYPGAYRKVSVELKIHNLAVDALLKSNQINEMEGGALLGFD
QDVHSGNEQCGFDEANASAAAFRVMKQLIQRCLADAVSSGNVFADAILQHLYRWLCSPQS
KLHDPALHRILHKVMQKVFALLLAEFRKLGATIIFADFSKVIIDTGKYDISAAKAYCDSL
LKALQSRELFEWIELEPIHFWHSLLFMDQYNHGGILAESHENSQEKSEVDIVSNWNIAQY
LPEKIQDHFVLIVSEFLHTPWKYAQEQAANRKSSLDGCLCTPSITITAAENFEAHIVQYL
KGQISSYFTEKLLGIVRDIVLHMKGLNGSGKVGQQSVHNVPHKGDAALEFIKHVCTVLAL
DHSIQHDVLVLRKNLLKYVHVKEFAPEAEFHDPCPSFILPNVICSYCNDCRDLDLCRDSA
LLADEWCCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCCRCRQVKAAHLAEQCG
CAGSFKCKEDVSEFRSKMQIFLNIAIRKKFQLLQECTSWILQIN
NT seq 6615 nt   +upstreamnt  +downstreamnt
atgaatggcggagataaccgacggccggaccggcgagacctttggagatcgaagaagcag
aagctaatccgcagcgcagaagaggagctcgagtccaagcttggctttgatctcttcact
gaaggggaaaaacgcctcggatggttacttactttcgcttcgtcatctttggaggattcg
gatgcaggaaaagtatatagttgcgtcgatctttactttgtttctcaggatggttcttgt
tttaagtcaaagttcaaattccgtccttacttttacgcagctgcaaagaacaaagcagaa
atggatgtggaagcctatttgagacgacgatatgaaactcaaattgcagggattgaaatt
gtggagaaggaagatcttgatcttaaaaaccatttgtctggtctacacaaacgttattta
aaaatatcttttgatactgttcaacaattgatggatgtgaagagagatctagtgcatgtt
gttgaaagaaaccggacaaaatttgatgctgctgaagcatacgagtcgatattaatgggg
aatagagaacaaaggccactagatcttttagatcttctagttgatctccgtgaatatgat
gttccttaccatgttcgttttgccattgacaatgatgtgagatgtggccagtggtacgat
gtaagtgtttctagtactggagtcacgctagagaagagaactgatcttttgcaacgtgct
gaagtgcgtgtctgtgcatttgatattgagacgacaaagcttcctttgaaatttccagat
gccgagtatgattcaataatgatgatatcatacatggttgacggacaaggttacttgatt
attaacagagagtgtgtagggcaagacatagagggcttagagtatactcctaaaccagaa
tttcaaggatttttcaaagtcacaaatgtgaaaaatgagatagaacttctacggctgtgg
tttacccacatgcaagaggtcaagcctggtatttttgttacatacaatggtgattatttt
gactggccattcatagaaaaaagagctgcttatcatggatttaaaatgagtgatgaaata
gggtttcgatgtgatgaaaatcagggggaatgtcaagccaaatttgcttgtcatttggat
tgttttgcttgggtcaaacgtgatagttatcttcctcaggggagtcatggcctcaaggct
gttacaaaggcaaagctgggttatgatccactagaggtgaatccagaggatatggttcaa
tttgcaaaggaaaagccccagatgatggcctcctattctgtttctgatgctgttgcaact
tattacttgtatatgacctatgttcatccctttattttctctctggcaactattattccc
atgtcacctgacgaggttttgcgcaaaggaagtgggacactttgcgaaatgcttctgatg
gttcaggcctacaaggcaaatgttatctgccctaacaaacaccaatcggatgctgagaag
ttctataagaatcaccttcttgagagtgagacctatataggtggccatgtggaatgcctt
gaaagtggtgttttcagatctgatcttccaactagctttaagcttaacccatctggctat
gagcaactgatcagtaatcttgaccgagatctacagtatgctattagagttgaggggaag
atggacttggaatcagtcttgaactacgacgaagtaaagaatgaaataatggaaaagctt
gtgaagttacgagatgaacctatccgtgaagaatgccctctcatttatcatttagatgtt
gctgcaatgtacccgaatattattttgacaaacaggcttcagccaccatcaatagttaca
gatgaggtctgtactgcatgtgatttcaatcgtccggacaagacttgcctccggaaactt
gaatgggtttggcgtggggagatattcatggcaaagaaaagtgattattaccacctgaag
aagcaaatcgagtctgaattttttgatggtactgataatcagttgtcaaaatcttttctt
gacctgcctaaactggagcagcagtccaggctgaaagaccgattgaagaaatactgtcag
aaggtttacagacgggtattggacaagccagtcactgaacttcgagaagcagggatctgt
atgcgtgaaaaccccttttacgttgacacagttcgcagctttcgagatagaaggtatgaa
tacaaaggactgaataaagtttggaaagggaagctgtctgaagccaaggctggtggaaac
cctatgaagatccaagaagcacaagacatggtagtgctttatgattccttacaacttgcc
cataagtgtattctgaactcattctatggatatgtcatgcgcaaaggtgcgagatggtac
tcaatggaaatggctggtgtagttacatatactggtgctaaaatcattcagaatgcccgc
ttacttgttgaaaaaattgggaaaccacttgaattagacacagatggtatctggtgtgca
cttcctgggtcttttccagaaaattttacttttaaaactaatgacttgaagaagaagctg
actatctcttatccatgtgttatgcttaatgttgatgtggcaagaaataatacaaatgat
cagtaccagacacttgtgaatcctgtcaataaaacatacacaactcatagtgaatgctca
attgaatttgaagtagatggcccatacaaggcaatgattatacctgcgtctaaggaagaa
ggaatattaatcaagaaaagatatgctgtttttaatgatgatggaacccttgcggaactg
aaaggttttgagataaagcgtagaggtgagctgaaactcatcaaagttttccaggcagag
ctttttgataagttccttaatggatccaccttagaggaatgctactcagctgtcgctgtt
gttgcaaaccgctggcttgatcttcttgatagtcaaggaaaggatattgcggatagtgag
ttattggattacatatcggaatctagcacaatgagcaagtctttagcagattatggtgaa
caaaagtcatgtgcagtgaccacagcaaggcgtcttgctgattttcttggtgatgctatg
gttaaagataaaggactgcactgccagtatatagtggcatgtgaaccaagaggtacacct
gttagtgaacgtgctattcctgttgcaatatttgaaactgatcctgaaataatgaagttc
tatctacgcaagtggtgcaaaacttcttcagatgttggcatacgttctattgttgattgg
ttgtattacaagcaacggcttagctcggcaattcagaaaattatcactatacctgccgca
atgcaaaaggttacaaatcctgtcccaagggtcgctcatcctgattggcttcataaaagg
gttcgtgagaaggaggataaattccgtcaaagaaagttggttgatatctttggctcatca
gttagaaatgattcagtgaaaaaggcaaatgatgctgttctcaccacagatgtggttgga
gatctagaagacttccaaaacaaaaggggttctaagaaaggacctgtaccaattgttcgt
agttatgaagtgaataaggatcaaggtccaatcgaggcagctgtccaaggcaatactatg
caacaccaaactgatcatagaggaagtgagcaaaatttgtcgtcaatattgcagccaaat
gttcaatccactgaaaatattgacagaaatgttgactatcaaggatggcttgaactgaag
aagaggaaatggaaggataatctggaaataaggaagaggcaaaggttgagtaatctaagg
acatcacatcacgtcagtcacaattctgaaatactgggtgccatggaaaaccataaagat
gcctctggaagagctggtgttggttcatattttagaagacatgaagtatctctaacaaat
tcctattggcagattatgcagctagttccaggttcacagaatggtcaattttttgcttgg
gttgttgttgaaggaattatgcttaaggttcctataactgttccaaaagtgttctatttg
aactctaaagcaactatatcagaaaattttcctggaagacgggtaaacaaggttctgcct
catggaaggcagagctataacctatttgaggttataattgatgaagatcagtttaggagg
gagagcaagaagcttgctgctcttcttgctgatccagaaattgagggaatttatgaaaga
aagattctgctggagtttaatgctattctccagcttggttgtgtttgtaaagtagataag
acagccaagaaacgaaatgcccaggatggttggagactgagtgaactgcatatgaagact
acaactgaatgtgcatatctggagcaggcaatccctttcttttacttgtatcatagtatt
tgtgaaggccgtgccatatatgctgcttatttttcttcatcaggagcagtgtttgtggtg
gtagttaatcctcaccatgaaagtgaaagtatatctccatatatccttgagaaatatttt
cgcgaagcttgccaggcattgtctattgaaccaccaactcgtaatggtatttctttcaag
gtgaactatgttgaacatgtcaaggatgctgaaaaaaatttacaaagagctataagtgaa
cacaggcatgaacatcaaggacctattctcgctgtcattgaatgcccaaatactcaaatg
atgaagtcaggtatacaagctctagaagatttcccttgtgtgagcataccttccaatgct
cgtgataatgattatcagcttcttgtatggcaacaaacagcagcaaaaattggaatgcag
cggtgttctgcatcatctcagtggttgagtgagaggatctctctctcaagatatgcacat
gtacccttgggcaattttcaatctgattggctgttatatacagcagatgtcttctattct
agagccttgcgtgatcagcaacaggtactctggatatctgatgatggtgttcctgaccta
ggaggcattggtgaagaagatacatgttttgctgatgaggtctgtcaacctgttatcaca
taccctggagcatacagaaaagtttccgtggagctaaagattcataacctggctgtagat
gctcttcttaaaagcaaccaaatcaatgaaatggaaggaggagctttattaggatttgac
caagatgtgcattctggaaatgaacagtgtggttttgatgaagctaatgcatccgctgct
gcatttcgagtcatgaagcaactgatacagaggtgccttgctgatgcagtttcctctgga
aatgtgtttgctgatgcaatactgcaacatctttatcggtggctttgcagtcctcagtca
aagcttcatgatccagctcttcaccgcatactacacaaggtcatgcaaaaggtgtttgct
ttgctgttggccgaattccgcaaattgggtgccacaattatatttgcagacttctccaag
gttatcattgacacaggaaaatatgatatatcagcagctaaagcttattgtgatagcttg
ctgaaagctctgcagagtagagagctatttgaatggattgaacttgagccgattcacttc
tggcattccttgttatttatggatcagtataaccatggggggatcttggcggaatctcat
gaaaattcacaagaaaagtcagaagtggatattgtttctaactggaacattgctcagtat
ttacctgagaagattcaggatcattttgttttaattgtctccgagtttctgcatactccc
tggaaatatgcacaggagcaagctgcaaatagaaaatcctctctggatggctgcttatgc
actccatcaatcactattacagctgctgagaattttgaggcccatatcgtacaatatctc
aaagggcagattagctcctacttcacagaaaaacttctagggattgttcgtgatattgtg
cttcatatgaaagggttgaacggatctggaaaagttggtcaacagagtgtgcataatgtt
cctcacaaaggagatgctgcactggagttcattaagcatgtctgtactgttctggccctt
gaccatagtattcagcatgatgttctggtgttaaggaagaatctactgaaatatgtacat
gtcaaggagtttgctcccgaagctgagtttcatgatccatgtccttctttcatcttaccc
aacgtgatttgcagctattgcaacgactgtagagacctggatttatgccgggactcggct
ttactggctgacgagtggtgctgtgctgtcccccagtgtgggcagccttatgatcgggag
gtgatggagaatgcacttttgcaaattgtacgacaaagagaaagactgtatcatctacag
gatctagtgtgctgtaggtgcagacaggtgaaagcagcacatttagcggaacaatgcggg
tgtgcagggtcttttaaatgcaaggaagatgtatctgagtttcgcagcaaaatgcagata
ttcttgaacatagccattcgtaaaaagtttcaactcctccaggagtgtacttcatggatc
ttacaaatcaactag

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