Gossypium hirsutum (upland cotton): 107959391
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Entry
107959391 CDS
T04793
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107959391
Membrane trafficking [BR:
ghi04131
]
Protein recycling
Others
EARP complex
107959391
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
107959391
NCBI-ProteinID:
XP_016750935
UniProt:
A0A1U8PIA0
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Position
A05:8203999..8223442
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AA seq
1111 aa
AA seq
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MQQPNLFPFGSVLGNPFLLNGGVGDLSDGGFDSSRVFFLVPFLLFQGGGMDLSKVGEKIL
SSVRSARSLGLLPSSPSSDRPEVPARAAAAAAVARALSGLPPDQRYSLPSSSEELMSIYG
SKPQSQIVEDIEEKFYEEEFDPIKHVLEHIPSEENELEYFEKQATLRLAQLDRVAEQLSR
NVMEHHEVMVKGMNLVRELEKDLKIANVICRNGRRHLTSSMNEVSRDLVVNTDSKKKQAL
MHLLPVLAELLHARDMQVSLESLVEEGNFCKAFQVLSEYLQLLDSFSELSAIQEMSRGVE
VWLGRTLQKLDSLLLGVCQEFKEEGYLTVVDAYALIGDISGLAEKIQSFFMQEVISETYS
VLKSIILYEVILMLREYDSSEDQDVQMQNSRLTYSDLCLQIPESKFRQCLLRTLAVLFKI
MCSYHEIMGFQLENKVLECPATNAKLMKGGTPGSSSIKESTTATSSADTSGRMDSGNVES
DKPVSDGRNGDGATSSSGSPWYQLRKEAITFVSQTLQRGRKNLWQLTTSRVSVLLSASAA
ASTSIHQFLKNYEDLSTFILAGEAFCGVEAFEFRQKLKGVCGNYFAAFHRQNVSALKMVL
ERETWLRLPPETAQIISFAGLVGDGAPLIAASDGRSSNSRVLRADKSANKVDTGAKKSGF
SPWLRNGNPFLLKVSSSHKEAHNSSPLNGTTSVEYEGNVDNIHGDVSPRGDENHINGANS
ISEEENEDLLADFIDEDSQLPSRISKPNLSRSYSPHFSNDDFTAQTGSSLCLLRSMDKYA
RLMQKLEIVNVEFFKGICQLFEMFFYFVFETFGLQNMNLSGKTSTDSLNYRLKTALSQIT
QDCEEWIKTSSGPLSSSTAHADLTATAPQNTNFGSPAGTSFGLKERCAGADTVALVARIL
HRSRTNLQSLLLKSNTAIVEAFFVHLVGAVPDLVEHIHRTTARILLHINGYVDRIANAKW
ELKELGMEHNGYVDLLLGEFKHYKTRLAHGGIQKEVQDLLLDYGLEIVAETLIEGLSRVK
RCTDEGRALMSLDLQVLISGLQHFVSINVKPKLQIVETFIKAYYLPETEYVHWARAHPEY
SKNQIVGLINLVASMKGWKRKTRLEVLEKIE
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagccgaatctgttcccgttcggcagcgttttggggaatccgtttttgttgaat
ggcggcgttggcgatttaagcgacggtggatttgacagctctagggttttctttttggtc
ccttttttgttattccaaggaggtggaatggatttgtccaaggttggggagaaaatcctc
agctccgtgcggtccgcgcgatcacttggtctcttgccttcttctccctcttctgatcgg
cccgaggttccagctcgagctgcagcagcagcagctgttgctcgtgctctttcaggattg
ccacctgatcagagatatagtcttccatcgagttctgaagaactgatgtcaatatatgga
agcaaacctcagagtcaaatagtagaagacatagaggaaaaattctatgaggaggagttt
gatccgataaaacatgtcttggagcatattccttctgaagaaaatgaactagaatatttt
gagaaacaggccacacttagattagctcaactggatagagtagcagaacaattatcccgc
aatgttatggagcaccatgaagtaatggtgaagggtatgaatttggtcagggaattggag
aaagacttgaagattgcaaatgtcatctgcaggaatggcagaaggcatctgacatcatca
atgaacgaggtttctagggaccttgttgtgaatactgattctaagaagaaacaggctctt
atgcacttgcttccagtactagctgagcttcttcatgcacgggacatgcaagtatccctt
gagtctctggtcgaggaaggtaatttctgcaaggcatttcaagtactatccgagtattta
caactactagatagcttctcagagctttcagcaatacaagagatgagccgtggggttgag
gtttggctgggaagaactcttcaaaagctggactcgctcttgttaggagtttgtcaggag
tttaaagaagaaggctatttaactgtggttgatgcttatgctttaataggagatatctct
ggtcttgctgagaagatacaaagttttttcatgcaagaagttatctcagaaacctactct
gtcttgaagagtattattctctatgaggtaatattgatgttgcgggaatacgatagttca
gaggaccaagatgtacaaatgcaaaatagcagacttacctacagcgatctatgccttcag
atacctgaatctaagtttagacagtgtttgttaaggacactagctgtcctgttcaaaata
atgtgttcatatcatgaaatcatgggctttcagctggagaataaggttttagagtgccca
gcaacaaatgccaaattgatgaaaggcgggacacctggttcatcttccataaaggagtct
acaacagccacttcctcagctgatacatctggaaggatggattctggaaatgtagaatct
gataaaccagtttctgatggtagaaatggcgatggtgctacatcaagcagtggatctcca
tggtatcaattaaggaaagaagccataacttttgtgtcacaaactcttcagaggggacga
aagaatctttggcaacttacgactagccgagtgtcagtactgctgtctgcttctgctgct
gcttctacaagcattcatcaatttttgaaaaactatgaagatcttagcacattcatcttg
gctggggaagccttctgtggagttgaggcttttgagttcaggcagaaattgaagggtgtc
tgcggaaattattttgctgcatttcatcggcaaaatgtatctgcacttaaaatggttttg
gagagagaaacctggcttagattgccaccagagacggcacaaataattagttttgctggg
ctagtaggtgatggagcacccttaattgctgcctctgatggtaggtcttctaattctagg
gtgcttcgtgctgacaaatcagcaaacaaagttgacacgggtgccaagaagagtggattt
tctccttggcttagaaatggaaacccatttttgctaaaagtaagctccagtcacaaagag
gctcataattcctccccacttaatggaacaacctctgttgaatatgagggaaatgttgat
aatattcatggtgatgtctctccacgtggtgatgaaaatcatatcaatggtgccaattcc
atctcggaagaggaaaacgaggatttacttgctgactttattgatgaggatagtcaactc
cctagtcgaatttcaaaacccaacctttcaagaagttactctcctcatttcagtaatgat
gattttacagcacaaacaggatcatctctttgtcttctgaggtcgatggataagtatgca
agattgatgcagaaacttgaaatagtaaatgttgagttttttaagggcatatgccagtta
tttgaaatgtttttctattttgtatttgaaacatttggtctgcaaaacatgaatttgagt
ggaaagacttcgacggactctcttaattatcggttaaagactgccttatcacaaataacg
caagattgtgaagagtggataaaaacttcatcaggacccttatcatcttcaactgcacat
gcagatttgacagccactgctcctcaaaatacaaattttggttctccagcaggcacctcc
tttggtctaaaggaaagatgtgcaggtgctgatactgtagctcttgtagctcggatattg
catagatctagaactaatctccaatcattgctattaaagagtaatacagctatagttgag
gctttctttgtgcacctggtgggtgctgtgccagatcttgtagagcacatacataggaca
actgccagaatactgcttcacattaacgggtatgttgatcgaattgctaatgcaaaatgg
gaattgaaagagcttgggatggagcacaatgggtatgtggatttgttgttgggagaattt
aagcactacaaaacaaggcttgctcatggaggaattcagaaagaggttcaagacctccta
ttggactacggactagaaattgttgcagaaactcttattgaaggtctatcacgagtgaag
cgatgcactgatgaaggacgagctctcatgtcattagaccttcaggttttaatcagtggc
ctacaacactttgtctccataaacgtgaagccaaagttacagattgttgaaactttcatc
aaggcttattatctccctgaaactgaatatgtacactgggcacgagctcatccggaatat
agcaagaatcagattgtggggttaataaaccttgttgcttcaatgaaaggttggaaaaga
aaaaccaggttggaagttctggaaaagatcgaatga
DBGET
integrated database retrieval system
