Gossypium hirsutum (upland cotton): 107959427
Help
Entry
107959427 CDS
T04793
Name
(RefSeq) indole-3-acetic acid-amido synthetase GH3.17
KO
K14487
auxin responsive GH3 gene family
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107959427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GH3
GH3_C
GH3_M
Motif
Other DBs
NCBI-GeneID:
107959427
NCBI-ProteinID:
XP_016750980
UniProt:
A0A1U8PII3
LinkDB
All DBs
Position
D04:complement(4124953..4129727)
Genome browser
AA seq
621 aa
AA seq
DB search
MCGSSPMNLIIFSVGRDSIANSQSIPKKKTEKAVWISVIGLMATNGYEGGLMMIEELTTN
AQQIQDEELGEILSRNAGTEYLRGFLHGQTEKQLFKKNVPIVTYEDLKPYIDRIANGETS
DILVAEPVTGFYLSSGTSGGQPKLIPVTAEYLKKGPLVGTFSEPPTMRHFGDINQAGKRM
ELMFARPEIETPSGLKAATFSTSMYSESKFRTNLPKLYTSPIETIFCPDPNQGLYCQLLF
GLIQRDEVVKVGSLFASTVLRGIKFLENHWQELCYDIKTGRLSDWITDSGCRNAASLIMK
PNPEQADLIESICNYKSWEGIIRKLWTKARYIGCICTGAMRQYTTELEFYCRGLPLVSAF
YACSETFCGLNLEPLCKPCDISYTLLPNMAYFEFLPVKNERDESFEMKSNDEDTELVDLV
NVKVGQCYELVVSTCAGLYRYKVGDVLMVSGFYNNAPQFQFLERKNVILSVDHEKTSETD
LFKAVTEAKALLDPLGFILTEYTSYVDTSSAPGHYVLFWEIKGKEGKHCKELDPKIMVEC
CSRMEESLHYTYKIYRKRSIIAALEIRVVKQGSFEALMDYFVSRGTSLSQYKKPNCIKSE
EALKLLDSRVMGKYFSPKSPL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgggtcaagtcccatgaatcttattatatttagcgtaggtagagattccattgcc
aatagccagagcatccccaaaaagaaaacagaaaaagctgtgtggatctcagtaataggg
ttgatggcaacgaatgggtatgaaggtgggttgatgatgattgaggaactgaccacaaat
gctcagcaaattcaagacgaggaattgggggaaatactaagtagaaatgcaggaacagag
tatttaaggggattcctccatggtcaaaccgagaagcagctctttaagaaaaatgttccc
atagttacgtatgaagatctcaagccttacatagataggattgctaatggggagacatca
gatatccttgtagctgaacccgttacagggttctatctaagctctgggacttcaggcggg
cagccaaagctgattcctgtcactgctgaatatcttaagaaggggccattagttggaacc
ttcagcgagcctccgacgatgaggcacttcggtgacatcaaccaagccggtaaaagaatg
gagcttatgtttgccagaccagagattgaaactcctagtggcctcaaggcagcaactttt
tcaacgagcatgtacagcgagagtaagtttagaaccaatttgcctaagctttacacaagc
cccattgagaccatcttttgcccagaccccaaccagggcctatactgtcaattacttttt
ggtttaatccaacgagacgaggttgtcaaggttggttcactctttgcatctacggtgcta
agaggtatcaagtttctagaaaatcactggcaagagctatgctatgacataaaaacaggt
cgattaagcgattggatcaccgactcaggatgcagaaatgcagcatcattgatcatgaag
cctaatccagagcaagctgacttgatagagagcatatgcaattataaatcatgggaagga
ataatcagaaagctatggactaaagcaaggtatattggttgtatttgtactggcgctatg
agacagtatactacagaacttgagttctattgccgagggctccctttagtttcagctttc
tatgcttgctcggaaactttttgtgggcttaacttagaacctctatgcaaaccttgtgat
atctcctacacattactccctaacatggcttactttgaattccttcctgtgaagaatgaa
cgtgatgaatcttttgaaatgaagagcaacgatgaagatactgaacttgttgatcttgta
aatgtgaaggttggtcaatgttatgaactagttgtctcaacttgtgcaggattatatcga
tataaagttggagatgttcttatggtgagtggtttctacaataatgcacctcaattccaa
tttctggagaggaaaaatgttatcctaagtgttgatcatgaaaaaacaagcgaaacagac
cttttcaaggctgtgacagaagcaaaggctcttctcgatccactcggattcatcttgacg
gagtacactagctatgttgatacttcttcagcaccaggtcactatgtcttattttgggag
atcaagggaaaagaagggaagcattgcaaagagcttgacccaaagataatggtagagtgt
tgctctagaatggaagagtcattgcattatacatataaaatctataggaaaaggagcata
attgcagctctagagattagggtggtaaagcaaggaagttttgaggcactaatggattat
tttgtgtccagaggaacttcattgagccaatacaaaaaacctaattgcattaaatctgag
gaagccttgaagctattagattcgagagtgatgggaaagtatttcagccccaaatcaccg
ttataa
DBGET
integrated database retrieval system
