Gossypium hirsutum (upland cotton): 107959639
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Entry
107959639 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107959639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107959639
03012 Translation factors [BR:
ghi03012
]
107959639
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107959639
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107959639
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107959639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
Ank_2
HA2_N
Ank_5
nSTAND3
AAA_22
ATPase
ResIII
AAA_19
Ank_3
AAA_11
Ank
Rad17
T2SSE
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
107959639
NCBI-ProteinID:
XP_016751224
UniProt:
A0A1U8PLZ1
LinkDB
All DBs
Position
A05:105225990..105235537
Genome browser
AA seq
1220 aa
AA seq
DB search
MGKKNPLAEISVIRLNNVLEKFRESEDEVYTFESNLTNKERALVHKACRKMGMKSKSKGR
GSQRCVSVYKIKEKASSMTEKNLTTVSFSEGTQLVLQDLFTNYPPDDGELEEKVFGKYSG
KSAKIRRKKDDIFSKPLMNAAEIAKKVKTLASKREKYPNMRQIDEERSKLPISGFRDAIT
SAVESHQIILISGETGCGKTTQVPQFLLDYMWGKGEACKILCTQPRRISATSVAERIANE
RGESVGENVGYKIRLESKGGRHSSIVFCTNGVLLRVLVANSRSKREDISDMTHIIMDEIH
ERDCFCDFMLAIIRDILPSYPHLRVVLMSATLDSERFSQYFGGCPIIRVPGFTYSVRSFY
LEDVLSILKSTDDNHLISANASAQDEDPELTEEDKIALDEAINLAWSIDDFDPLLDLISV
EGGSKIHNYQHSLTGLTPLMVFAGKGRVEEVCMLLSFGVDCSIISKDGKSALDWAEQENQ
QEAAEIIKNHIESSQNNIGGQNLLEKYIASGNPEIIDFVLIEQLLRKICIDSNEGAILVF
LPGWEDINRMKEKLFANPFFKDSSRFIIVPLHSMVPSADQKKVFNRPPLGCRKIVLSTNV
AESSITIDDVVYVIDSGRMKEKNYDPYNNVSTLQSSWVSKANAKQREGRAGRCQPGICYH
LFSKLRAASMLDFQVPEIKRMPIEELCLQVKLLDPACKVEDFLRKTLDPPVSETVHNALR
VLQDIGAFTQDEELTELGEKLGYLPVHPLTCRMLFFAILMNCLDPALTLACASDFKDPFV
LPMRPNEKQKAAAARHELASLYGGQSDQLALIAAFECWKNAKRKGLEGRFCSQYFVSSST
MNLLFGMRKQLQGELIRHGFIPDDVSSCSLNANHPGILHAVLVAGLYPMVGRILPVKQGK
RLIIEAANGSKVRLHTRSVNSKLVPKKPEDCPLIMYDEITRGDGGMFIRNCTVVGPFPLL
FLATEIAVAPIKGIVYDEDEDDGDDDDGDDDDGSDDGDGDACNTDGDEKLVVSKSGGKED
KVMSSPDNSVMVVVDRWLSFRSTALDVAQIYCLRERLLAAILFKVMHPHEVLPPVLGASV
YAIACILSYDGLSGIPTPAESVDSLTSRVRSTDINKSMPVMKDTSPNPSRFLLSLLNRSP
FSWSSFQKGVKGPAVGAVTNGVESMSYNQEAPVMSAGMSLDQAELQDPTSVASGSGVSKS
QGSGNGSCKRQRGKRSISRP
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagaaccccttagctgaaatctccgttatccgattaaacaacgtacttgag
aaatttcgtgaatcagaagatgaagtgtatacctttgaatccaaccttactaacaaagaa
cgagcattggtgcacaaggcatgccggaaaatgggtatgaaatccaaaagtaaagggcgt
gggagccagagatgtgtctctgtctataaaatcaaagagaaagccagcagtatgacagag
aagaatctaactactgtgtcattttcggaggggacacaattggttttgcaggacttattt
acaaattatccaccagatgatggagagcttgaagagaaggtatttggaaagtatagcgga
aaatctgctaaaatacgaagaaagaaagatgatattttctcgaagccattgatgaatgct
gcggagatagcaaagaaggttaaaacacttgcatctaagagagagaagtatccaaacatg
agacagattgatgaagagaggtcaaagcttccaatttctgggtttagggatgccattaca
tctgcagtagaatctcaccagattatcctcatttctggcgagactgggtgtggcaagaca
acacaggttccacaatttcttttggactatatgtgggggaaaggtgaggcctgtaaaata
ctgtgtactcagcctcggcgtatatcagctacatcagtggctgagagaatcgctaatgaa
agaggggaaagtgttggagaaaatgttggatacaagattcgcttggaaagtaaaggcggt
cgacactcatcaatcgtcttctgcacgaatggggtattattgagagtgctggttgcaaac
agtagatcaaagagggaagacatctctgacatgactcacattattatggatgaaattcat
gaaagggactgcttctgcgatttcatgttggcaattatcagggatatacttccttcgtac
cctcatctacgggtggtactgatgagtgctactcttgattctgaacggttttcacaatat
tttggtggttgcccaattatccgtgttcctgggtttacatattctgtaagaagtttctat
ttagaggatgtgctttctatcctgaaatccacagacgataatcatcttatttcagctaat
gcaagtgcccaggatgaagacccagaattaactgaagaagataagatcgcattggatgaa
gctattaatttggcttggtcaattgatgactttgatccacttttagatttgatttctgtt
gaaggagggtcaaagattcataattaccagcattctttgactggactaacgccactaatg
gtgtttgctggaaagggtagagtggaggaagtttgcatgctcctctcgtttggtgtagac
tgcagtataatctccaaggacgggaagagtgctttggattgggctgagcaggaaaaccag
caggaagctgctgaaataattaaaaatcatattgaaagttcccaaaataatattggggga
cagaacttactcgaaaagtatatagcatcaggtaatccagaaatcattgattttgttctt
attgaacaattactaagaaagatatgtattgattcaaatgaaggagccatccttgttttc
cttcctgggtgggaggatataaacagaatgaaagagaaattattcgccaacccctttttt
aaagattcttccagatttattatagtacctttgcattcaatggttccatctgctgatcaa
aagaaggtctttaatcgtccacctttgggctgccgcaaaatcgttctttcaaccaatgtt
gctgaaagttccattacaatcgatgatgttgtctatgttatagatagtggtagaatgaaa
gagaaaaactatgatccatataataatgtatcaacccttcagtcttcatgggtctccaaa
gcaaatgctaagcagagagaggggcgagctggtcgatgtcaacctggaatttgttatcat
cttttttcaaaacttcgagcagcttctatgcttgactttcaagttccagagattaagaga
atgccaattgaagagctctgtttacaggtgaaattgcttgacccagcttgcaaagtagag
gatttcttgcgaaagacattggaccctcctgtttctgaaactgtacataatgcacttaga
gtccttcaagatattggggctttcacgcaagatgaggaactgacagaacttggagagaag
cttggttatcttcctgttcatccattgacatgcaggatgcttttctttgccatattgatg
aattgccttgatccggcattgacactagcatgtgcttcagacttcaaggatccatttgtc
cttcccatgcgaccaaatgaaaagcagaaggctgctgctgccaggcatgagcttgcgtct
ctgtatggtgggcaaagtgatcagctggcactcatagctgcctttgagtgctggaagaat
gctaaaagaaagggtctagagggacgtttttgttcacaatactttgtctcatcaagcacc
atgaacttgctgtttggcatgcgtaagcagctccagggtgaactaatacggcatgggttt
attccagatgatgtctcaagctgtagtctaaatgcaaatcaccctggaatactccatgca
gtccttgtggctggtttgtatccaatggtgggaaggatactccctgtaaaacagggtaaa
cgattgattatagaggctgccaatggcagtaaagttcggttacacactcgctctgttaat
tcaaagttagtacccaagaaacccgaagattgccctttgattatgtatgatgaaataacc
cgtggggatgggggtatgttcataaggaactgtactgttgttgggccatttccattgtta
tttcttgcaacagagattgcagtggctcctataaaaggcattgtttatgatgaagatgaa
gatgatggggatgatgatgatggtgatgatgatgatggaagtgatgatggtgatggtgat
gcatgcaacactgatggtgatgaaaaattggttgttagtaagtcaggtggaaaagaagat
aaggtcatgtcctctcccgataattctgttatggtggttgttgatcgctggctatcattc
agatcaacagcacttgatgttgctcaaatttactgcttgagagaacgattattggcagca
atcttattcaaggtaatgcatccacacgaagttcttcctcctgttctcggggcgtctgta
tatgcaatagcttgtattctatcttatgatgggttatcaggcatcccaacgccagcagaa
tctgtagattcactgacttcgagggtgcgttctactgatatcaacaaatctatgccagtg
atgaaagatacaagtcccaatccaagtagattccttttgtcacttttgaaccgaagtcca
ttcagctggtcaagtttccagaaaggtgttaagggccctgcagtaggggctgtaacaaat
ggagttgagtccatgagttacaaccaagaggcacctgtaatgtcagctgggatgagctta
gatcaagctgagttgcaggaccctacgtcagttgcttccggttcaggtgtgtctaaatca
cagggttctggaaatggttcttgcaagcgacaacgcgggaagaggtctatatctagaccg
tga
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