Gossypium hirsutum (upland cotton): 107959741
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Entry
107959741 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107959741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107959741
03012 Translation factors [BR:
ghi03012
]
107959741
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107959741
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107959741
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107959741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
OB_NTP_bind
Helicase_C
DEAD
HA2_C
Ank_2
HA2_N
nSTAND3
ATPase
AAA_22
Ank_5
ResIII
AAA_19
Ank_3
AAA_11
Rad17
T2SSE
Ank
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
107959741
NCBI-ProteinID:
XP_016751368
UniProt:
A0A1U8PMD4
LinkDB
All DBs
Position
D04:complement(5725443..5735068)
Genome browser
AA seq
1219 aa
AA seq
DB search
MGKKNPLAEIAVIRLNNVLEKFRESEDEVYTFESNLTNKERAVVHKACQKMGMKSKSKGR
GSQRCVSVYKIKEKASSMTEKNPTNVSFSEGTKLVLQDLFTYYPPDDGELEEKVIGKYSG
KSAKIRRKKDDIFSKPLMNAAEIAKKVKTLASKREKHPNMRQIDEERSKLPISGFRDAIT
SAVECHQIILISGETGCGKTTQVPQFLLDYMWGKGEACKILCTQPRRISATSVAERIANE
RGESVGENVGYKIRLESKGGRHSSIVFCTNGVLLRVLVANSRSKREDISDMTHIIMDEIH
ERDCFCDFMLAIIRDILPSYPHLRVVLMSATLDSERFSQYFGGCPIIRVPGFTYPVRSFY
LEDVLSILKSTDDNHLISANASDQDEDPELTEEDKIALDEAINLAWSSDDFDPLLDLISV
EGGSKVHNYQHSLTGLTPLMVFAGKGRVEEVCMLLSFGVDCSLISKDRKSALDWAEQENQ
QEAAEIIKNHIESSQKNIGGQHLLEKYIASGNPEIIDVVLIEQLLRKICIGSNEGAILVF
LPGWEDINRMKEKLLANPFFKDSSRFIIIPLHSMVPSADQKKVFNRPPLGCRKIVLSTNV
AESSVTIDDVVYVIDSGRMKEKNYDPYNNVSTLQSSWVSKANAKQREGRAGRCQPGICYH
LYSKLRAASMLDFQVPEIKRMPIEELCLQVKLLDPACKVEDFLRKTLDPPVSETVHNALR
VLQDIGAFTQDEELTELGEKLGYLPVHPLTCRMLFFAILMNCLDPALTLACASDFKDPFV
LPMRPNEKQKAAAARHELASLYGGQSDQLALIAAFECWKNAKRKGLERRFCSQYFVSSST
MNLLFGMRKQLQGELIRHGFIPDDVSSCSLNANHPGILHAVLVAGLYPMVGRILPVKQGK
RLIIEAANGSKVRLHTRSVNSKLVPKKPEDCPLIMYDEITRGDGGMFIRNCTVVGPFPLL
FLATEIAVAPIKGIVYDEDEDDDGADGDGDDDDGSDDGDGDACNTDGDEKLAVSKSGGKE
DKVMSSPDNSVMVVVDRWLSFRSTALDVAQIYCLRERLLAAILFKVMHPHEVLPPVLGAS
VYAIAWILSYDGLSGIPTPAESVDSLTSRVRSTDINKSMPVMKDTSPNPSRFLLSLLNRS
PFSCSSFQKGVKGPAVGAVTNGVESMSYNQQAPVMSAGMSLYQAALQDPTSVASGSGASK
SQGSGDDSCKRQRGKRSIS
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagaaccccttagctgaaatcgccgttatccgattaaacaacgtacttgag
aaatttcgtgaatcagaagatgaagtgtatacctttgaatccaaccttactaacaaagaa
cgcgcagtggtacacaaggcatgccagaaaatgggtatgaaatccaaaagtaaagggcgt
gggagccagagatgtgtctctgtctataaaatcaaagagaaagccagcagtatgacagag
aagaatccaactaacgtgtcattttcggaggggacaaaattggttttgcaggacttattt
acatattatccaccagatgatggagagcttgaagagaaggtaattggaaaatatagcgga
aaatctgctaaaatacgaagaaagaaagatgatattttctcgaagccattgatgaatgct
gcggagattgcaaagaaggttaaaacacttgcatctaagagagagaagcatccaaacatg
agacagattgatgaagagaggtcaaagcttccaatttctgggtttagggatgccattaca
tctgcagtagaatgtcaccagattatcctcatttctggcgagactgggtgtggcaagaca
acacaggttccacaatttcttttggactatatgtgggggaaaggtgaggcctgtaaaata
ctgtgtactcagcctcggcgtatatcagctacatcagtggctgagagaattgctaatgaa
agaggggaaagtgttggagaaaatgttggatacaagattcgcttggaaagtaaaggcggt
cgacactcatcaatcgtcttctgcacgaatggggtattattgagagtgctggttgcaaac
agtagatcaaagagagaagacatctctgacatgactcacattattatggatgaaattcat
gaaagggactgcttctgtgatttcatgttggcaattatcagggatatacttccttcgtac
cctcatctacgggtggtactgatgagtgctactcttgattctgaacggttttcacaatat
tttggtggttgcccaattatccgtgttcctgggtttacatatcctgtaagaagtttctat
ttggaggatgtgctttctatcctgaaatccacagacgataatcatcttatttcagctaat
gcaagtgaccaggatgaagacccagaattaactgaagaagataagatcgcattagatgaa
gctattaatttggcttggtcaagtgatgactttgatccacttttagatttgatttctgtt
gaaggagggtcaaaggttcataattaccagcattctttgactggactaacgccactaatg
gtgtttgctggaaagggtagagtggaggaagtttgcatgctcctctcgtttggtgtagac
tgcagtctaatctccaaggacaggaagagtgctttggattgggctgagcaggaaaaccag
caggaagctgctgaaataattaaaaatcatattgaaagttcccaaaaaaatattggggga
cagcacttactcgaaaagtatatagcatcaggtaatccagaaatcattgatgttgttctt
attgaacaattactaagaaagatatgtattggttcaaatgaaggagccatccttgttttc
cttcctgggtgggaggatataaatagaatgaaagagaaattgctcgccaacccctttttt
aaagattcttccagatttattataatacctctgcattcaatggttccatctgctgatcaa
aagaaggtctttaatcgtccacctttgggctgccgcaaaatcgttctttcaaccaatgtt
gccgaaagttccgttacaatcgatgatgttgtctatgttatagatagtggtagaatgaaa
gagaaaaactatgatccatataataatgtatcaacccttcagtcttcatgggtctccaaa
gcaaatgctaagcagagagaggggcgagctggtcgatgtcaacctggaatttgttatcat
ctttattcaaaacttcgagcagcttctatgcttgactttcaagttccagaaattaagaga
atgccaattgaagagctctgtttacaggtgaaattgcttgacccagcttgcaaagtagag
gatttcttgcgaaagacattggaccctcctgtttctgaaactgtacataatgcacttaga
gtccttcaagatattggggctttcacgcaagatgaggaactgacagaacttggagagaag
cttggttatcttcctgttcatccattgacatgcaggatgcttttctttgccatattgatg
aattgccttgatccggcattgacactagcatgtgcatcagacttcaaggatccatttgtc
cttcccatgcgaccaaatgaaaagcagaaggctgccgctgccaggcatgagcttgcgtct
ctgtatggtgggcaaagtgatcagctggcactcatagctgcgtttgagtgctggaagaat
gctaaaagaaagggtctagagcgacgtttttgttcacaatactttgtctcatcaagcacc
atgaacttgctgtttggcatgcgtaagcagctccagggtgaactaatacggcatgggttt
attccagatgatgtctcaagttgtagtctaaatgcaaatcaccctggaatactccatgca
gtccttgtggctggtttgtatccaatggtggggaggatactccctgtaaaacagggtaaa
cgattaattatagaggctgccaatggcagtaaagttcggttacacactcgctctgttaat
tcaaagttagtacccaagaaacccgaagattgccccttgattatgtatgatgaaataaca
cgtggggatgggggtatgttcataaggaactgtactgttgttgggccatttccattgtta
tttcttgcaacagagattgcagtggctcctataaaaggcattgtttatgatgaagatgaa
gatgatgatggggctgatggtgatggtgatgatgatgatggaagtgatgatggtgatggt
gatgcatgcaacactgatggagatgaaaagttggctgttagtaagtcaggtggaaaagaa
gataaggtcatgtcctctcccgataattctgttatggtggttgttgatcgctggctatca
ttcagatcaacagcccttgatgttgctcaaatttactgcttgagagaacgattattggca
gcaatcttgttcaaggtaatgcatccacacgaagttcttcctcctgttctcggggcgtct
gtatatgcaatagcttggattctatcttatgatgggttatcaggcatcccaacgccagca
gaatctgtagattcactgacttcgagggtgcgttctactgatatcaacaaatctatgcca
gtgatgaaagatacaagtcccaatccaagtaggttccttttgtcacttttgaaccgaagc
ccattcagctgttcaagtttccagaaaggtgttaagggccctgcagtaggggctgtaaca
aatggagttgagtccatgagttacaaccaacaggcacctgtaatgtcagctggaatgagc
ttatatcaagctgcgttgcaggaccctacgtcagttgcttccggttcaggtgcgtctaaa
tcacagggttctggagacgattcttgcaagcgacaacgcgggaagaggtctatatcttga
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integrated database retrieval system
