Gossypium hirsutum (upland cotton): 107959802
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Entry
107959802 CDS
T04793
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107959802
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
107959802
REST complex
107959802
Heterochromatin formation proteins
Other heterochromatin formation proteins
107959802
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
107959802
NCBI-ProteinID:
XP_016751445
UniProt:
A0A1U8PJT0
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All DBs
Position
A05:complement(100297591..100306335)
Genome browser
AA seq
1363 aa
AA seq
DB search
MKRIREDIYSGSQFKRPFGSSRAESYGQNRMLGGGGVGRGGAAAGGECGGPVGGGMPQKL
TTNDALTYLKEVKEMFQDQKEKYDMFLEVMKDFKAQRTDTVGVIARVKELFKGHNNLIYG
FNTFLPKGYEITLHDDEAPPKKTVEFEEAISFVNKIKKRFQSNEYVYKSFLDILNMYRKE
HKDINEVYNEVASLFEDHPDLLDEFTRFLPDSAAAPLTQQVPYSRTSTQRYNEQSSATPT
LRHIQMDKQGRRDWIMTSHADKDLSVDRPELDDDKDILKMQKDQRKHVEKDSRDQRTREH
DDPEHDNNRDFNLQRFPDKKRSGRKIEGFASNDERDTFKSMCNQGFIFCEKVKERLCSSD
DHQAFLKCLNIYSYGIIKRNDLQNLVTDLLCKHPDLMNEFNQFLECCENTDGLLAGVISK
KSLSGNGHISRPVKIEEKDREQRSEMEGPKEKERYREYLAKSIQELDLSNCQRCTPSYRL
LPDDYPIPSASQRSGLGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELD
MLLESVSSTAKRVEDLLNSINENKINMDSPIRVEEYFTVLNLRCIERLYGDHGLDVMEIL
HKNPALALPVILTRLKQKQEEWTKCRSDFNKVWAEIYSKNHYKSLDHRSFYFKQQDSKNL
SVKSLVAEIKELKEKNQKEDDVLVASVAGHRQPLAPHLNYEYLDVDIHEDLYKLIEYSCE
EMCSTKEQLSKVMRLWTTFLEPMSGIPPRPNGREGTDDAGKAQNPAVNCVTSSIAESGGS
PRADTTVNSTQQKAATDRDENGSPELTNSCRNGLANGETSAKEEHSSHLSRDDLKKNTQP
GINMLAIGALAFEAENNHSKSNTEGASAASRPSSIAAGEDHEPEANADLPHTSEGGDVTK
HALLVNGGPTDDTNARRYLEAPAGPLKIEKEEGELSPNGDFEEDNFVAYGDNGLKAVPVA
KHSVESGQYQSGKGSHCKDAGVENDADADDEDSENASEAGDDASGSESAGDECSRGEHEE
EEVERDEVDGKAESEGEAEGTNDMHAGDGMSVSTSERFLFTVKPLEKHVPAVFPEEDQNS
SRVFYANDDFYVLFRFHQILYERILSAKTNSTGVELKRKNSKESCSSDFYARFMSALYSL
LDGSSDNMKFEDECRAIIGNQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLFEYEKS
RKHARTMDSVYYENARVLLHEENIYRLKCSSSPSRLSIQLMDNVIEKPEAFAVSMEPNFS
AFLHNDFQSVFPGKKEPHGVTLKRNKKKYANLDEFAAVCMAMEGVELVNGLENKIACNSY
KISYVLDTEDFFYRSRRNSPPKCGSYNTQARVQRFHKFLSASQ
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaataagagaggatatatattccggttctcaatttaaacgcccatttggttct
tcgagggctgaatcctatgggcaaaaccgaatgctgggtggagggggagtgggaagggga
ggagcagcagcagggggtgaatgtggaggaccggtaggaggagggatgccacagaaactg
actacaaatgatgccttaacgtatctaaaggaagtgaaggagatgtttcaggatcaaaaa
gagaaatacgacatgttccttgaagtcatgaaggatttcaaggctcagaggactgataca
gttggtgtcattgcccgagttaaggaattattcaaagggcacaacaacttgatttatgga
tttaataccttcctacctaagggatatgaaataacccttcatgacgatgaggctcctcca
aaaaagacggttgaatttgaagaagcaatcagttttgttaacaagataaagaaacgattc
caaagcaatgagtatgtttataaatcattcctggatatcttgaatatgtacaggaaggag
cacaaggacataaatgaggtctataatgaggttgcttctctttttgaggaccatcctgat
ctgctagatgagttcacaagatttttaccagattctgcagcagcgcctttgactcaacaa
gttccatatagtcgaacttcaactcagcgttataatgagcaaagctctgctacacccacc
ttgcggcatatacaaatggacaagcaaggtcggagggattggattatgacatcccatgct
gacaaagatctcagtgttgatcgtcctgaactggatgatgataaagatatcctgaaaatg
caaaaggaccagagaaagcatgtggaaaaggacagtagggatcagagaacccgtgaacat
gatgatcctgagcatgacaacaacagggattttaacttgcagcgatttcctgacaaaaag
agatcgggaaggaagattgaaggatttgcttccaatgatgagagagatacttttaaaagc
atgtgcaaccaagggttcatattctgtgagaaagttaaggagaggctatgcagttctgat
gaccaccaggcattcttaaagtgccttaatatttatagctatggaataataaaaagaaat
gatttgcaaaatttggtgactgatttactttgcaagcatccagatcttatgaatgagttc
aatcagttcttggagtgttgtgagaatactgacgggcttcttgctggtgttattagtaaa
aaatcacttagtggaaatggacatatatccaggccagtgaagatagaggaaaaagataga
gaacagaggagtgaaatggaggggcctaaggaaaaggagagatatagggagtatctggca
aaatccatacaggaacttgacctttccaactgccaacgttgtaccccaagctatcggctt
ctgcctgatgattatccaataccttcggcaagtcaaagatcagggcttggcgctcaagtg
ctgaatgatcactgggtatctgtgacttcaggaagtgaggattattcttttaagcacatg
cgccgaaatcagtatgaagagagcttattcagatgtgaggatgatagatttgaactggat
atgttgctagaatctgtgagttcaactgccaagcgtgttgaggaccttctgaacagcatt
aatgaaaataaaatcaatatggattctccaattcgtgtagaagaatactttactgttcta
aatttgaggtgcattgagcgtttatatggtgaccatggtcttgatgtaatggaaatatta
cataaaaaccctgctcttgcattgcctgtcattttaactcgcctgaagcagaagcaagaa
gagtggacaaagtgccgttctgactttaacaaagtttgggctgaaatttattcaaaaaac
cattataaatcacttgatcatcgcagcttctatttcaagcagcaggattcgaagaacttg
agtgtaaaatctttagtggctgaaatcaaggagttgaaagagaagaaccagaaagaggat
gacgttcttgtggctagtgttgctggtcacagacaacccttagctccacacctcaactat
gaatatttggatgttgacattcatgaagacctatataaacttatagaatattcatgtgaa
gagatgtgctcgactaaagaacagttaagtaaagtaatgaggctgtggaccactttcttg
gagccaatgtcgggcattcctcctcgacctaatggcagagagggtactgatgatgctggt
aaagctcagaatcctgctgtaaactgcgttacgtcaagcattgctgaaagtggtggaagt
cccagagctgatactactgttaattccacacaacaaaaggctgctactgacagagatgag
aatggttcacctgaattaactaattcctgcagaaatggtttggcaaatggggaaacttca
gccaaagaagaacactcaagtcatttatctagagatgatttaaagaagaacactcaacct
ggaataaacatgctggcaattggagcccttgcatttgaagctgaaaataatcacagcaaa
agcaatactgaaggggcttcagcagcatctagacctagtagcattgcagctggtgaggat
catgaacctgaagctaatgcagaccttccgcacacatcagagggtggtgatgtaacaaaa
catgctctattagttaatggagggcctacagatgacactaatgctaggagatatcttgaa
gcacctgctggtcccttgaaaattgagaaagaagaaggtgaattatcacctaatggtgat
tttgaggaggataattttgttgcttatggtgataatggcctaaaggctgttccagtggcg
aagcatagtgttgaaagtggacagtatcagtctggaaaagggtcacattgtaaggatgct
ggagttgaaaatgatgcagatgctgatgatgaggatagtgaaaatgcctctgaggctggt
gatgatgcatcaggcagtgagtctgcaggtgatgaatgctctcgtggagagcacgaagag
gaagaggttgagcgtgatgaagttgatggtaaggccgagagtgaaggtgaagccgaaggg
acgaatgatatgcatgcaggagatggcatgtctgtgtcaacttccgaacggtttcttttt
acggtgaagcctcttgagaaacacgtacctgcagtttttcctgaagaagatcaaaacagt
tctcgggttttttatgcaaatgatgatttctatgttcttttcagatttcatcaaatccta
tatgaaagaatactttctgcgaaaacaaactcaacaggtgttgagttaaagcggaaaaac
tcaaaagaatcgtgttcttcagatttttatgccagatttatgagtgcactgtacagtcta
cttgatggatcttctgacaatatgaagtttgaagatgaatgtcgggcaataataggaaac
cagtcatacgtattattcacattggacaagttaatatataaattggttaagcagcttcaa
gctgttgcaacagatgagatggataataagcttcttcaactgtttgagtatgaaaaatcc
cggaaacatgcaaggacaatggattcagtgtattatgaaaatgcgcgtgtcctccttcat
gaggagaatatttatcgattgaaatgttcatcttctccatctcgattatctattcagctg
atggacaatgtgattgaaaaacccgaggcttttgctgtttcaatggaacctaatttttca
gcttttttgcacaatgattttcaatcagtctttcctgggaaaaaggaaccacatggtgtt
acgctaaagagaaacaagaaaaaatatgcaaacctagatgaatttgctgccgtttgcatg
gctatggaaggcgttgaactggttaatggcttagagaacaagatagcttgcaattcatac
aagatttcttatgtgttggacaccgaagatttcttctatcgtagtagaagaaattcgcca
ccaaaatgcggatcatataatactcaggcaagagtacaacggttccataaatttttatcg
gcttcccaataa
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