Gossypium hirsutum (upland cotton): 107960167
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Entry
107960167 CDS
T04793
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107960167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107960167
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
107960167
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
107960167
NCBI-ProteinID:
XP_016751938
UniProt:
A0A1U8PNM6
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Position
A06:complement(127911413..127915441)
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AA seq
549 aa
AA seq
DB search
MRRSRKDGDSVDEERDSRRRRIVDSPSSPAEEPLVPYNDDEDDERRVLDHSGGAEEVGRR
VETEEEDDDDDDDPYGRGSILDKSNRQVEVRRDCPYLDTVNRQVLDFDFERFCSVSLSNL
NVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRY
VLNPRFSREQVEQLDKNKQWSRALDGSDYLPGMVGLNNIQKTDFVNVTIQSLMRVTPLRN
FFLIPENYQHCRSQLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSE
PVEFMSWLLNTLHADLRTSKKSSSIIHKCFQGELEVVKETQNKAISEKKEGGGEHNGALK
IMDGATENNNIGTETYRMPFLMLGLDLPEPPLFKDVMEKNIIPQVPLFNILKKFDGETVT
TTVRPPARMRYRVIRLPQYLIVHMRRFTKNNFFREKNPTLINFPVKNLELKDYIPLPAPT
KENEKLRSKYDLIANIVHDGKPDEGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSEA
YMQIYEQQQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaagcaggaaagatggtgatagtgtagatgaggaacgagactcaagacggcgg
aggattgtggattctccttcttcacctgctgaagaaccgcttgtgccttacaatgatgat
gaagatgatgaaaggagggtattggatcacagtggtggggcagaagaagttggccgaagg
gttgaaactgaagaagaagatgatgatgatgacgatgatccatatgggagaggatcaatt
ttagacaaatcaaatcgccaggttgaagtacgaagagactgcccttaccttgatactgtt
aaccgccaggtgctagattttgattttgagaggttttgttcggtctctttgtcaaatttg
aatgtgtatgcatgtctggtatgtgggaagtattaccaaggaagagggaagaagtcccat
gcttatactcatagtctcgaagcaggacatcatgtctatatcaatcttcgaaccgagaag
gtgtattgtctccctgatggatatgaaattaatgacccgtcattagatgatatacgatat
gttctaaacccaaggttttccagagaacaagttgaacaacttgacaagaacaagcaatgg
tctagagcacttgacggttcagattaccttccaggaatggtgggattgaataatattcaa
aaaactgattttgtcaatgtcaccattcaatctttaatgagagttactcccttgaggaac
tttttcctcatccctgaaaattaccagcactgtagatctcagcttgttcatcgatttggg
gagctcacacgaaagatttggcatgctcgaaactttaaaggacaggtgagccctcacgag
tttctacaagccgttatgaaagccagtaaaaaacggtttcgaataggtgtgcagtctgag
ccggtagagtttatgtcatggcttcttaatacactgcatgcagatcttagaacttcaaag
aaaagtagcagtatcatccataagtgctttcagggggaactggaggttgtaaaagagacg
cagaacaaagctattagtgagaaaaaagaaggtggtggggaacacaatggagctctgaag
attatggatggtgcaactgagaataataacattggtaccgaaacttacagaatgcctttt
ctgatgcttggattggatttaccagaaccacctcttttcaaagatgtgatggagaaaaat
ataatacctcaggttcctttgttcaatatattgaagaagtttgatggtgagactgtaacg
acgactgttcgtcctccagcgaggatgagataccgtgtcatcagattgccacagtacttg
atagttcacatgcgccgctttactaagaataatttcttcagagaaaagaatccaacattg
attaactttcctgtgaaaaacctagagttgaaggactacattcctctgccagcaccgacc
aaagagaatgaaaagttgcggtccaagtatgatctgattgctaatatcgttcatgatggt
aagcctgatgaggggttctacagggtcttcgtacagcggaaatcagaagaactatggtat
gaaatgcaggatctgcatgtttctgaaacacttcctcagatggttgcattgtctgaagct
tacatgcagatatacgaacagcaacagtag
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