KEGG   Gossypium hirsutum (upland cotton): 107960200
Entry
107960200         CDS       T04793                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ghi04812]
    107960200
Cytoskeleton proteins [BR:ghi04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     107960200
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_WDR75_1st NBCH_WD40 eIF2A WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_IP5PC_F Beta-prop_VPS8 Beta-prop_WDR19_1st VPS8_N Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 107960200
NCBI-ProteinID: XP_016751976
UniProt: A0A1U8PLA3
LinkDB
Position
A06:127649664..127656244
AA seq 927 aa
MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWSIGKPTSLMSLCGHTSP
VESLAFDLAEDFVLAGASTGVIKLWDLEETKMVRGLTAHRSNCTAMEFHPFGEFFASGSM
DTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLNEF
KFHEGHIRSIDFHPLEFLLATGSADGTVKFWDLETFELIGSSRPEATGVCSITFHPDGKT
LFCGLDDGLKVYSWEPVACHDSLDIGWSTLGDLCINEGKLLGCSCYRNSVGVWGADVSHI
EPYGRNDHSEKKFNLKGSYSSEKAGSGMRSTLGSQPLSLDYETKEIKNIYVDTAGSNTIA
APKDGSLSSTEVVLPLDASEISNPEAEEQSPGTGVNAKSNGQLGNNPVVKETTNSVKESI
TFSRTKPGMLLRPAHVRKPSVNKFEVEKLSAVVESGRLDTAMDMNSRTSLVLEDGAKKPC
DEKDSNIETVTEKPEKMLSPQTPSNQETRNESLDHNKGSNYVKFVNGVAVVRGRTRSLVE
RFERRDLLNCSGDLATDSIAPAVPEADKTPAIIEGGTKISKTQPISANDVSTAESQSSRT
EPASSCEGGITASPIPTRESTPTSVGIITGDQISRRESTFTPGRMIARNQNSRKESTFAS
DRIITINRISRRESTSTSDGVIKKNQITRNESTSISDGIISRNQHSRKEAAAANDVSGPN
GLYTENQISRRGFNSGNDRNVTNIESRISKDESISTNDGNLTESLMQTHDTFLSTIRSRL
TKLQVVRHFWEKNDIKGSIGALRKLPDHSVQADVIGVLMEKMEILNLDLFSGLLPVLMGL
LDSKMERHINISLEMLLRLVAVFGPMIRSTVSARRSVGVDLHAEQRRECCNQCFMQLQKI
QKLLPPLVRRGGTIARGAQELNLALQE
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggcgaagcgtggatataagctgcaggaatttgtggctcatacggctaatgtgaattgt
ttaagtatgggaaaaaagacacgtaggcttcttattacaggcggagatgatcataaggtc
aatgtttggtcaattgggaaacccacttctttaatgagtctttgtggtcatactagtcca
gtggaatctttagctttcgatttggccgaagattttgtgcttgccggtgcatctacaggt
gtgattaagctttgggatctcgaagaaacaaagatggttcgtggacttactgcacataga
tccaattgcactgctatggagtttcatccgtttggcgagttttttgcatctggttccatg
gatacaaatttgaagatatgggatattagaaaaaagggatgcattcacacatacaagggt
catactcgaggcattagtacgattcgattcactcctgatggccgttgggtagtttctggt
ggatttgataatgttgtaaaggtgtgggatcttactgctggaaaactcttgaatgagttc
aagtttcacgaaggacatattcgctccatagatttccatcctctcgagttcctcctcgcc
acaggttcggcggatggaacggtaaaattctgggacttagaaacttttgaactgattgga
tcttcgagacctgaggctaccggggtttgctcgattacctttcatcctgatgggaaaacc
cttttctgtggattggatgatggtttgaaggtttattcatgggagccagtggcttgtcat
gattctcttgatattggatggtcaacacttggtgacctctgcatcaatgaaggcaaactt
ttggggtgctcgtgctatagaaattctgttggagtttggggagcagatgtatcgcatatc
gagccatatgggcgaaatgaccattccgagaagaaatttaatcttaagggaagttattca
tcagagaaagcagggagcggcatgagatcaactttgggatcacagcccctatctcttgat
tacgagaccaaggaaataaagaacatatatgttgacacagctggcagtaatacgattgct
gcaccaaaagatggctctttgagttctacagaagtggtgcttccgttggacgccagtgaa
ataagtaatccagaagctgaggagcagagtcctggaacaggagttaatgctaaatctaat
ggacaattaggtaacaaccctgtcgtgaaagagactacaaattcggtaaaagaatctatc
accttttcaaggacaaaaccaggaatgttgctcagacctgctcatgttagaaaaccatca
gtcaacaagttcgaggttgaaaagctatcagctgtggttgaatctggaaggttagacact
gcaatggatatgaattctcgaactagtcttgtattggaagatggagctaaaaaaccctgt
gatgaaaaggattcaaacattgaaaccgttactgagaaacctgaaaagatgttatcaccg
cagacaccctctaatcaagaaactcgtaatgaatcactcgatcacaacaaaggctcaaac
tatgtcaaatttgtgaatggagtggctgttgttcgaggaagaacccgtagtctggttgag
agatttgaacgaagagacttattaaactgcagtggtgatctggcaactgacagtatagct
cctgctgtacctgaagcagataaaacaccggccataatcgaaggagggacaaaaatatct
aaaacacaacctatatcggccaatgatgtaagtactgccgaaagtcaaagttctagaact
gaaccagcttctagctgcgagggaggcattactgctagtccgattcctacaagggaatcg
acgcctacttccgttgggatcattactggagatcaaatttctagaagggaatcaaccttc
actcccggtaggatgattgctcgaaatcagaattctagaaaagaatcaaccttcgcctct
gataggatcattaccataaatcgaatttctagaagggaatcaacctctacttctgatggg
gtcattaagaaaaaccaaattactcgaaacgaatcgacttccatttctgatggaatcatt
tctagaaatcaacattctagaaaggaagctgctgctgctaatgatgtgagtggaccaaac
ggtctatatactgaaaatcagatttctaggaggggattcaattctggtaatgatcggaat
gttactaatatcgaaagccgaatttcaaaggacgagtcgatatctactaatgacggaaac
ctgactgaaagtctcatgcaaacgcatgatacattcttaagtactattcggtcacgcttg
acaaagctacaggtggtgcggcatttttgggaaaagaatgacattaaaggttccatcggt
gcactgcgtaaactgccagatcattctgtgcaagctgatgttatcggtgttctcatggaa
aaaatggagattctcaacttagatctgttttccggcttgcttcccgtgcttatgggctta
ttagatagtaaaatggaaaggcatataaatatctcattggagatgctcctaaggcttgta
gctgtttttggtccgatgatacgctcaactgtctcagcccgacgtagtgttggtgttgat
cttcatgctgagcagaggcgagaatgttgcaatcaatgttttatgcaattacaaaagatt
caaaaacttctcccaccactcgtaaggagaggcggtacgatagcaagaggtgcacaggaa
ttgaatctggctcttcaagaatga

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