Gossypium hirsutum (upland cotton): 107960207
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Entry
107960207 CDS
T04793
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107960207
09124 Replication and repair
03420 Nucleotide excision repair
107960207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107960207
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107960207
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107960207
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107960207
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107960207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
107960207
NCBI-ProteinID:
XP_016751986
UniProt:
A0A1U8PLB3
LinkDB
All DBs
Position
D06:66010992..66020800
Genome browser
AA seq
1189 aa
AA seq
DB search
MEDDSEYDPQLMEDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSKRDHSIS
LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH
KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEPPKDQKKKGA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacagtgagtacgatccacagctaatggaagatgaagacgacgaggagatc
acgcaggaagatgcgtgggcggttatctctgcttacttcgaagagaaaggtttggtgcgt
caacagctcgactcgttcgatgagtttatccaaaacacgatgcaggaaattgtggatgaa
tcggctgatattgagatcaggcccgagtcacagcataatcctggtcatcagtctgacttc
gctgagactatctataagattagctttggtcagatctatctaagtaagcctatgatgact
gagtcggatggtgaaactgctactttatttccaaaagctgcaaggttgcggaatctcact
tactctgctccattgtatgtcgatgtaactaaaagagttattaaaaaagggcatgatggt
gaagaagtcactgagactcaagattttaccaaagtgttcatcggaaaggttcctataatg
cttcgttcgagttattgcacactatatcaaaattcagagaaggatctgactgagcttggg
gagtgtccatatgatcaaggtgggtatttcattatcaatgggagtgaaaaagttctaatt
gcccaagagaagatgagcacaaatcatgtctatgtattcaaaaagaggcaaccaaacaaa
tacgcctatgtagcagaagttcgatccatggcagagtcccaaaataggccaccaagtacc
atgtttgtgcggatgctttcgcggacgagtgccaaagggggctcttcaggccagtacatt
cgtgctactcttccatatattcgtactgaaattcctatcataattgtgttccgggctttg
ggatttgttgctgacaaggatatattagagcatatatgctatgacttctctgatacccag
atgatggagctgcttcggccttccttagaagaagcatttgtgattcaaaaccagcaggtt
gcactagattatatcggtaaaagaggagcaactgttggtgttaccagagaaaagaggatt
aagtacgcaaaagagatccttcaaaaggaaatgcttcctcacgttggtgttggagagttt
tgcgagacaaagaaagcttattattttgggtatatcattcaccggctgcttctttgtgca
cttggccgaagggcagaagatgatagagatcattatggcaacaagaggctggaccttgct
ggtcctttacttggaggcctctttaggatgctttttcggaagttaactagggatgtgaga
tcttatgtgcagaagtgtgtggataacggaaaggatgtaaacctgcaatttgctatcaaa
gcaaaaactattacaagtggtcttaaatactcactcgctactggaaattgggggcaagca
aatgcagctggtacaagagctggagtgtcacaggtgttaaatcgtttgacatatgcctcc
acgttgtcgcacttgcgaaggctcaattctcctataggacgtgaagggaaattggctaag
ccacgtcagttgcataactcacagtggggaatgatgtgtccagctgaaacaccagaagga
caggcctgtggacttgtaaagaatcttgccttgatggtgtacataactgttggatcagct
gcatatcctattcttgaatttttggaagaatggggtacagagaattttgaggaaatttca
cctgcagttattcctcaagctacgaaaatttttgtcaatggttgttgggttggtgtgcat
cggaatcctgatatgcttgtaaccacattgagacggctgagaagacgggttgatgtcaac
actgaagttggtgttgttcgagatattcgtttgaaagaacttagaatatatactgactat
ggccgttgcagtcggccattgttcattgtggagaagcaaaggcttctaataaaaaagaaa
gacatccatgcattgcaacaaagggagaccccagaagacggtggctggcatgatcttgta
gccaagggatttattgaatatattgacacagaagaagaggagacaactatgatttccatg
accatcaatgatcttgtccaagcaagaatcaacccagaggaagcttattctgaaacttac
acccactgtgaaatccacccttcactgattttgggtgtttgtgcttcaattataccattc
cctgatcataatcagtccccacgtaatacctatcaatctgctatgggtaagcaagcaatg
ggtatatatgtcaccaactaccaatttcgaatggatacattggcctacgttctctactat
ccccaaaagccacttgttactacacgagctatggaacatctccattttcggcagcttcct
gctggcattaatgctattgtggccattgcctgctattctggatataaccaagaagattcc
gttatcatgaatcaatcatcaatagaccgtggattcttccgatcacttttcttccgttct
taccgggatgaggagaaaaaaatggggaccctcgtcaaagaagatttcggccgaccagat
agggctaccaccatgggaatgaggcatggctcttatgataaattggatgatgatggtctt
gcacctcctggaacaagagtttcgggtgaggatgtaattattgggaagaccacacctatt
tcacaggaggaagctcagggtcaagcatcacgctattcaaaacgtgatcatagcataagc
ttacgacacagtgagacaggcattgtggaccaggttctattgacaactaatgctgatgga
ttgagatttgtgaaagtaagagtaagatccgttcggattcctcagattggagataagttc
agtagtcggcatggtcaaaagggaacggttggcatgacttacacccaggaagacatgcct
tggactgtggaaggcatcacacctgatatcattgtgaatccacatgctattccttcccgt
atgacaatcggtcagcttattgagtgtattatgggaaaagttgccgctcacatgggcaag
gaaggtgatgcaactccatttacagatgtcactgtggacaatatcagtagagcacttcat
aaatgtgggtatcaaatgcgtggtttcgagaccatgtataatgggcacacaggcaggcgg
cttactgctatgatattcttgggacccacatattaccaacgactaaagcatatggtcgac
gataagatccattcacgtggtcggggtcctgttcaaattctaacgaggcaacctgcagag
ggacgttctcgtgatggtggtcttcgttttggagagatggaacgagattgcatgattgca
catggtgctgcccatttcctcaaggaaagattatttgaccaaagtgatgcatacagagtc
cacgtttgtgaacgatgtggattgattgctatcgcaaatctaaaaaagaactcgtttgaa
tgcagaggatgcaagaataaaactgatatagttcaggttcatattccttacgcttgtaaa
ctgctgttccaagagcttatggcaatggcaatcgctccaagaatgcttacgaaggaaccg
cccaaagaccaaaagaagaaaggagcgtga
DBGET
integrated database retrieval system
