Gossypium hirsutum (upland cotton): 107960286
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Entry
107960286 CDS
T04793
Name
(RefSeq) oligouridylate-binding protein 1B
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107960286
03041 Spliceosome [BR:
ghi03041
]
107960286
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
107960286
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107960286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_7
RRM_5
RRM_occluded
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
107960286
NCBI-ProteinID:
XP_016752090
UniProt:
A0A1U8PLL8
LinkDB
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Position
A06:126782829..126788326
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AA seq
422 aa
AA seq
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MQHQRLKQQQQALMQQALMQQQSLYHPGILAPPQIEPIPSGNLPPGFDPSTCRSVYVGNI
HTQVTEPLLQEVFASTGPVEGCKLVRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPI
KVNWAYASGQREDTSGHFNIFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQKTGRSRG
FGFVSFRNQQDAQSAINDLSGKWLGSRQIRCNWATKGVSSSDDKQSSDAKSVVELTNGSS
EDGKEMTNNEAPESNPQYTTVYVGNLAPEVTQVELHYHFHALGAGVIEEVRVQRDKGFGF
VRYCTHAEAALAIQLGNTHSFLCGKQIKCSWGSKPTAPGTSSNPLPPPAATPLAGLSATD
LLAYERQLAMNKMGGVHALMHPQGQHPLKQAAMGVGAAGASQAIYDGGFQNVAAAQQLMY
YQ
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaccagaggctgaagcaacagcaacaagccttgatgcaacaagctcttatgcaa
caacagtctctttatcacccaggcatcttagctcctcctcagatagagccaatcccaagt
ggaaatctgcctcctggttttgatccaagtacttgccgcagtgtgtatgtcggaaacatc
catacacaagtgactgaaccactactccaagaggtttttgcaagtaccggtcccgttgaa
ggctgcaagcttgtcagaaaggaaaagtcatcatatggattcatccactacttcgaccgc
agatcagctgctcttgccatattatctctaaatggaaggcatttatttggacagcctatc
aaggtcaattgggcatatgctagtggtcagagagaggatacatcaggacactttaacatt
tttgttggggatctcagtcctgaggttactgatgcaatgctgtttgcgtgcttttctgtc
tatcctagttgttcggatgcgagggtaatgtgggatcagaaaactgggcgttcaagagga
tttgggtttgtatcatttcgaaaccagcaggatgcacaaagtgcaattaacgacttaagt
ggaaaatggcttggcagtcgacaaattcgttgtaactgggcgacaaagggtgtcagtagc
agtgatgacaagcagagctctgatgccaaaagcgtggtagaactaaccaatggctcatca
gaggatggtaaagagatgaccaataatgaggctcctgagagtaatcctcaatatactacg
gtttatgtcggcaatcttgctccagaggtcactcaagtagaactccactatcacttccat
gctctcggtgctggggtgattgaggaggtccgtgtccagcgtgataaaggctttggcttt
gtgagatactgtactcatgctgaggcagctttggctattcaactggggaacacacactca
tttctatgtggcaagcaaattaagtgttcttggggcagcaagcctacagcacctgggaca
agttcaaacccccttcccccacctgccgccacacctttagccgggctttctgccactgac
cttttagcttatgagcgacaactagccatgaacaaaatgggtggtgttcacgcactaatg
catcctcaaggacaacaccctctcaaacaagcggcaatgggagttggtgctgctggagca
agccaggccatatatgacggtggattccagaacgtggcggctgcccagcaactaatgtac
tatcagtga
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