Gossypium hirsutum (upland cotton): 107961695
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Entry
107961695 CDS
T04793
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107961695
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ghi01002
]
107961695
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107961695
03036 Chromosome and associated proteins [BR:
ghi03036
]
107961695
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107961695
Peptidases and inhibitors [BR:
ghi01002
]
Metallo peptidases
Family M67
107961695
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107961695
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
107961695
BRISC complex
107961695
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
107961695
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
107961695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
107961695
NCBI-ProteinID:
XP_040971765
UniProt:
A0A1U8PQ01
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All DBs
Position
A06:complement(58695734..58702285)
Genome browser
AA seq
435 aa
AA seq
DB search
MSLTCVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGNVTALIWGASPQSRSDRR
KDRVETNPEQLAAASAQADRMTASTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
SGFIGLIFSCFSEDTNKVGRIQVIAFQSSDGKQNHVTGPIALSPLNRSSVIDLESSLSSS
ENPLLTSGSAEVDSHMQDTSDSRPAQGSAKSGIRSVDLGGFFANADASYLGQEQGRGYYN
TNNIQNAVVDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLVNLDSPLKS
FTDLQCVLYEEERAAYNQAILQTMRDGKVHPLSFIHHTSTYQASMCKLIEYCLSPAISAL
QDRLKENEIRLALLTDEAQMLETEASKGSGPSSPHTVSHGFRGSASVGQRDLHSSAEPIS
MRTFSGPESRSRKRS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaacatgtgtgaaaatgtctgaggatgtttggttaacttgtcttacacatgca
ttgtccactgaaactgaagagatcatgggtcttcttctcggtgatattgagtactcaaaa
gatggaaatgtcactgcattgatatggggagcgtcaccacaatcacgatctgatcggcgg
aaggaccgagttgagacaaatcctgaacagttggcagctgcatcagctcaagctgataga
atgactgcatcgactggcagaacaacacgagttattgggtggtaccattcacatccccat
attactgttcttccttctcatgttgatgtgcggactcaggcaatgtatcaacttctagat
tctggatttattgggctcatattttcttgttttagtgaagatacaaacaaggtgggaaga
atacaagtcattgcttttcagtcatcagatgggaaacagaatcatgttacaggaccaatt
gctttatcaccactgaatagaagctcagttatcgatcttgagtcatctctaagctcttct
gaaaatccattgttgacatctggatctgcagaagtagatagtcacatgcaagacactagt
gattccagaccggctcaaggatctgccaagagtgggatacgatctgtagacttaggaggt
ttcttcgccaatgctgatgccagctatctagggcaagagcaaggcagaggttactacaat
accaataatatacagaatgctgttgttgatattgatcccatggatatgtcggaaagcatg
caagaagccatgcaccgctcaaatttggacatgagtggtgcagagtatgtccgaaaagaa
attcctctgcatgttttgccaacatcttctcttgttaatcttgactcaccattgaagtca
ttcacggatttgcaatgtgtactatatgaagaggagcgggctgcgtataaccaagccatc
ttgcaaactatgagagatggcaaagtgcatcccctttctttcattcatcacacgtctaca
tatcaggcttcaatgtgcaagttaattgaatattgtttaagtcctgccatcagtgcactt
caggatcggctaaaagagaatgaaattcggttagcattgttgacggatgaagctcagatg
ttggagaccgaagcctccaaggggagtggaccaagttctccacacacagtgtcacatgga
ttccgaggaagcgcttcagttggccagagagatttgcatagttcagctgaacccatcagc
atgaggacattttctggtcctgagagcagaagcagaaagcggtcttaa
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