Gossypium hirsutum (upland cotton): 107961757
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Entry
107961757 CDS
T04793
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107961757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107961757
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107961757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Mg_chelatase
RUBY_RBDX
Motif
Other DBs
NCBI-GeneID:
107961757
NCBI-ProteinID:
XP_040971509
UniProt:
A0A1U8PQC7
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All DBs
Position
A06:complement(47465776..47471575)
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AA seq
679 aa
AA seq
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MPRKVNYGLDYDDDYDDNYDEYDYRYEVDENAETPSQKETIKHSVWRCSICTYDNDETMS
SCDICGVLHGPLLNNSIYDKKRTANIFDLKSSRVSSTVVGRDEAVKVSSMRSDSSNLSTE
KGKHNRLDEINILKNIEVGPPAGSRTSDNCSASVPEGWLDHVDESSVAVNLQSSVKRSLS
LMPKERNVMVDDSSSSRNGGEANSLTSNLENISFAAKSGHSNDANPGRANSRAQYKPEKW
MLPEKAEHSLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFA
YAWALDESAEERERGITMTVAVAYFDSKRYHVVVLDSPGHKDFVPNMITGATQADASILV
IDASIGSFEAGMDGTKGQTREHAQLIRSFGVDQLIVAVNKMDAVDYSKERFDLIISQLGT
FLRSCGFKDSSVSWIPLSAVENQNLVSAPSNFRLSWYHGPNLLDAIDSFQPPTREFSKPL
IMPICDVIKSPSQGQVSACGKLEAGAVRSGSKVLVMPSATIATVRSLERDSQACPIGRAG
DNIAVSLNGIDGNHVMAGGVLCHPDFPIAFAKHLELKVLVLDGATPILIGSQLEFHIHHA
KEAARVARISSLLDSKTGKVAKKAPRCILAKQSAVVEVILQEAICVEEFSKCKVLGRVFL
RTLGRTVAVGIVTRIVEEQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagttaactatggacttgattatgatgatgattatgatgataactacgac
gaatatgactacagatatgaagtagatgaaaatgcagaaacaccttcccaaaaagaaaca
atcaaacacagtgtgtggcgttgctccatttgtacatatgataatgatgaaaccatgtca
tcatgtgatatttgtggggttcttcatggtcctttactcaataactccatctatgataag
aagagaacagccaatatttttgacttaaaatcttccagagtttcctcgactgtggttggg
agggatgaagctgttaaagtaagttctatgagatcagatagttcaaatctgtcaacagaa
aaaggcaagcacaatagattagatgagattaatattttgaagaatatagaagttggtcca
ccagcaggttccagaacttcagataactgttctgcttcagtgccagagggttggcttgat
catgtggatgaaagcagtgttgcagttaatctgcaatctagtgtgaaaaggtcattgtca
ttgatgccaaaagaaagaaatgttatggtggatgatagcagctcttcaaggaatggaggt
gaggcaaatagtctcaccagtaatctggaaaatatttcttttgctgctaaatccgggcac
tccaatgatgcaaaccctggaagagcaaattcacgtgcacagtataaacctgaaaagtgg
atgctccctgaaaaagcagaacattcactgactcaactaaatcttgcaattgttgggcat
gttgattctggaaaatcgacgctctctggaagactgcttcaccttttgggaagaatatcc
caaaaagaaatgcacaaatatgaaaaggaggccaaattacagggaaaaggatcctttgct
tatgcttgggcattggatgaaagtgctgaagaaagagaaaggggaattactatgactgtg
gctgtggcttattttgattcaaaaagatatcatgttgttgtccttgactccccagggcac
aaagattttgttccaaacatgataactggggcaacacaagctgatgcttcaattcttgta
atagatgcttctattggttcatttgaagctggtatggatggcaccaagggacagactagg
gagcatgcacaactcatccgaagttttggcgttgatcaacttatagttgctgttaacaaa
atggatgctgtagattattctaaggaaaggtttgatttgataatatcacagcttgggaca
tttctccgttcttgtggctttaaggattcctctgtctcttggattccattgagtgctgtt
gaaaaccagaacttagtgtctgcaccttcgaactttcgactatcctggtatcatggaccc
aatctgttagacgcgattgattccttccaacctcctactagggagttttcaaagcctcta
attatgcctatatgtgatgttataaagtcaccttcacaggggcaggtgtctgcatgtggc
aagttggaggctggagctgtaagaagcggatcaaaggttttagttatgccatctgcaact
atagcaaccgtgcgttccttggagcgtgattcccaagcttgcccaattggaagggctgga
gataatatagctgtcagcctgaatggaatagacggaaaccatgtgatggctggcggtgtg
ttatgtcatcctgattttccaattgcatttgcaaaacatttggagttgaaggtgcttgtt
ttggatggtgcaactccaattttaattggttctcagttggagtttcacatacaccatgca
aaggaggctgcaagagttgcaaggatatcatctttacttgattcaaagactgggaaagtt
gcgaagaaagcaccccgctgcattcttgctaagcagagtgcagttgttgaggtgattttg
caggaagcgatttgcgtggaagagttttcgaaatgcaaagtccttggaagggtgtttctt
aggacattaggaagaacggttgctgtgggcatcgtgacccgaatagtggaggagcagtaa
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