Gossypium hirsutum (upland cotton): 107962588
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Entry
107962588 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107962588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107962588
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107962588
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_MalT
TPR_10
ARM_TT21
DUF627
HEAT_Nup120
TPR_8
FAM199X
Motif
Other DBs
NCBI-GeneID:
107962588
NCBI-ProteinID:
XP_016754526
UniProt:
A0A1U8PTR4
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Position
A06:complement(9828232..9834955)
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AA seq
855 aa
AA seq
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MDSRDSSSSPAPNRDSSAGEDDGVLPVTAALAKEAALHFQSRNFSECVDVLDQLKLKKEG
DPKVLHNIAIAEFFRDACSDPKKLLEVLNNVKKRSEELVHASGEQAESGSNDGNKFTSGS
KGSGTTIQQFSSSDSASVIYTVESDASVAALNIAVIWFHLHEYSKALSVLEPLYQNIEPI
DETTALHICLLLLDVVLACRDASKAADVLNYLEKAFGVGNVNQGENGNMTTTLQSTNLVG
KSSSVPSSSFVSDASSSDLAASVNASENPLSRTLSEDRLDEMFSTLDIGGQNLPRPTDLT
SANDHARITVDRSISGVDLKLMLQLYKVRFLLLTRNVKLAKREVKHAMNIARGRDSSMAL
LLKAQLEYARGNHRKAIKLLMASSNRTDAATSSMLNNNLGCIYYKLGKYHTSAVFFSKAL
SVCSSLRKEKPLKLLTFSQDKSLFITYNCGLQYLACGKPILAARCFQKASSIFYKRPHLW
LRLAECCLMAVEKGLVKGSQTPSDKSEIRANVIGKGRWRKLLIEYGVSRNGHVDSVEKNG
WALGGDVQPKLSLSLARQCLYNALHLLNRSEWSNSKSVLPSNSSVEKSESRDGASSKNLI
HKKLPVIESRASTMLVGLVNSNGDLKESKGGANQEIVQNSISYYEDIHRRENQMIKQALL
ANLAYVELELDNPLKALSAALLLLELPGCSRIYIFLGHVYAAEALCLLNKPREAAEHLAI
YLSGGNNIELPFSQDDCEQWRVEKPVDCEEPIGGAAAAKNPSHEGLQEFMFLKPEEARGA
LCTNLAAVSAIQGELERAHHFVTQALSLVPNSSKATMTAIYVDLMLGKSQEALPKLKHGS
HVRFLPSSLQLNKSS
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcgagattcatcatcgtcgccggctccaaatcgagatagttccgccggcgaa
gacgatggcgtccttcccgttactgctgcactcgctaaagaagccgctcttcacttccag
tctagaaatttctccgagtgcgtcgatgtgttggatcagctaaagttgaaaaaggaaggc
gatccaaaggttcttcataatattgcaattgcggaattttttcgggatgcttgctcagat
ccaaagaagttgcttgaagtccttaacaatgtcaagaagagaagtgaggagcttgttcat
gcatctggggaacaggcagagtctggtagcaatgatggtaataaatttacttcaggctca
aaaggaagtggtacaactattcagcagttttcttcttcagatagcgccagtgttatctac
acagttgaatctgatgcctctgtggctgcactaaacatagcagtcatttggttccacctt
catgaatactcaaaggcattatcagttcttgaacctctgtatcaaaacattgaaccaata
gatgagacaacagcccttcatatctgcttattgctgctggatgttgtgttagcttgccgt
gatgcttcgaaagctgctgatgttttaaattatttggaaaaagcatttggtgttggcaat
gtgaaccaaggggaaaatggtaacatgaccaccaccctgcaatccacgaatctagttgga
aaatcttcctctgttcctagcagctctttcgtctcagatgcatctagttcagacttagct
gctagtgtaaatgcctctgagaatcctctatctagaactttatcagaagaccgactggat
gaaatgttttcaaccctggatattggtggacagaacttaccacggcctactgatcttaca
tctgcaaatgatcatgcccggatcacggttgatagatcaatctctggtgttgatttaaag
ctgatgttgcaactttacaaggttcggtttttgctgctcactagaaatgtaaagctagca
aaacgcgaagtgaagcatgctatgaacattgctcgagggagagattcatctatggctctc
cttttgaaggcccagcttgagtatgctcgtggaaaccatcgaaaagccatcaagttgttg
atggcatcaagtaatcggacagatgcagcaacttcaagcatgctcaataacaatctaggc
tgcatttactataagcttgggaagtatcatacatctgcagttttcttttccaaggcactc
agtgtttgttcatctcttcgtaaggagaagcctctaaagctattaacattctcacaggac
aaatctctgttcataacatataactgtgggttgcagtacttggcatgtgggaaaccgata
cttgctgctcgctgtttccagaaagcaagttcaattttctacaaaagaccccacttgtgg
cttcggcttgctgaatgttgtctaatggctgtagaaaaaggacttgtaaaaggaagtcaa
actccatcagacaaatcagaaattagagccaatgttattggcaagggtaggtggaggaaa
cttctaatagaatatggggtttcaagaaatggacatgtagattctgttgaaaagaatggt
tgggctttaggtggtgatgtgcagcctaaactttcattatcccttgctaggcagtgtctc
tataatgcattgcacttgctgaaccgttcagaatggagtaattctaaatctgttttaccc
tccaattcatccgtggagaagagtgaatcaagagatggtgcgtcttccaagaacctaatc
cataagaagttacctgtcatcgaatccagggcttcaaccatgttagttggtctagttaac
tcaaatggagatttgaaagagtcaaaggggggagctaatcaggagattgttcagaactcc
atctcctattatgaagatattcacagaagagaaaatcagatgattaagcaagctcttctt
gctaatctggcatatgtagagttagaactagataatcctttgaaggccctctctgctgca
ctattgctgttagaactaccaggttgttcaagaatttatatctttcttggtcacgtctat
gccgcagaggctctttgcttactgaacaaacctagggaagctgcggagcatttggccatt
tatttgtctgggggcaataacattgaattgccgtttagtcaagatgactgtgagcagtgg
cgagtagaaaaacctgttgattgcgaagaaccaattggaggagcggcagctgccaagaat
ccttctcatgagggcttgcaggaattcatgtttctgaagccagaagaggcacgtggagcg
ctttgtactaatcttgccgctgtgtctgcaatacaaggtgaacttgagcgggcccaccat
tttgtgacacaagcgttgtccctggtaccaaacagcagcaaagccactatgactgcaatt
tacgtcgatctcatgctcggtaagtcacaagaagctctgcccaagttaaaacatggtagt
cacgtcagattccttcccagcagtctacagttgaataaatcctcttaa
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