Gossypium hirsutum (upland cotton): 107962623
Help
Entry
107962623 CDS
T04793
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107962623
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107962623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
107962623
NCBI-ProteinID:
XP_016754566
UniProt:
A0A1U8PTV2
LinkDB
All DBs
Position
A06:10726181..10728795
Genome browser
AA seq
355 aa
AA seq
DB search
MKSEIVDISDFGAVGDGTADSSKAFLKAWNFVCSREIGNGVRVIFVPENQTFLLHPVTFN
GPCKAKEIKFLIMGRIISPVSPKTWEGLDQAKWLTFYKVSGLKIKDSGEIDGRGWGWWNQ
SCRDHPRLEGCTSLAPTAMIFESCKTSSLSQVRLINSSQTHVLIRGTDGFIVDHVKITAP
ETSPNIDGIHIISASNIFIRNSIIGTGDDCVSIGDHTTNIHISHVKCGPGHGISIGSLGR
SGNVVQVQNTRVNTVTFKGTTNGARIKTWQVGKGYFRGVMFENLFFNSVKNPIIIDQNYC
NVRGACKELETGVQIRDVVYRNLWGTSSTEVAITLNCSRSVSVRNQTHSKHNLEA
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcagagattgttgatatatcagattttggtgctgttggcgatggcactgctgat
agttctaaggcatttttgaaggcatggaatttcgtatgcagtagggaaataggaaatggt
gtacgggttatattcgtcccagaaaaccaaacgtttttgttgcatccagtcacttttaac
ggtccatgcaaagctaaagagataaagtttctgataatgggaagaataatttcaccggtt
tcacccaagacatgggagggactggaccaggccaaatggctaacgttttacaaagtttcc
gggctcaaaatcaaggatagcggcgaaatcgacggacgaggctggggttggtggaaccaa
tcatgcagggatcatccacgcctggaaggatgcacttcattggcaccaactgctatgata
ttcgagtcctgcaaaaccagcagtctcagccaggttcggctgataaacagctctcaaaca
catgtactaattagaggaactgatggttttatcgtcgaccatgtgaagataacagctccg
gaaaccagccccaatattgatggaattcatattatttcagcaagcaatatattcattaga
aatagtatcattggcactggagatgattgtgtctcaattggagatcacactactaatatt
catatatctcatgtaaagtgtggacctggacatggaataagcattggaagcttaggaagg
tcaggaaatgtcgtgcaagtgcagaacactcgtgtaaacacagttaccttcaaaggaacc
acaaatggtgctcgaatcaagacatggcaggttgggaaaggttattttcgaggagttatg
tttgagaacctattcttcaactcagtgaaaaacccaataatcatagatcaaaattactgc
aatgttaggggagcttgcaaggaactggaaactggagttcagataagggacgtggtttac
agaaatctatggggaacatcaagcactgaagtcgccattacattgaactgcagtcgttca
gtttctgttagaaatcaaacccactccaagcataatctagaagcatga
DBGET
integrated database retrieval system
