KEGG   Gossypium hirsutum (upland cotton): 107962790
Entry
107962790         CDS       T04793                                 
Name
(RefSeq) UBP1-associated protein 2B
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107962790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107962790
   03041 Spliceosome [BR:ghi03041]
    107962790
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     107962790
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107962790
Spliceosome [BR:ghi03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    107962790
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_11 Cut8
Other DBs
NCBI-GeneID: 107962790
NCBI-ProteinID: XP_016754790
UniProt: A0A1U8PUG5
LinkDB
Position
D08:complement(63110950..63114690)
AA seq 482 aa
MAKKRKQRSSEPQPTKTTPDPQPIQQQPEYVPDEDPNRKVEEELQLQEVEEEVEVEEEVE
VEEEVEEEDDDDDDEEAQNQTLVGSSNANGAPKETGQEEDLDDEPFEKLLEPFGKDQLIT
LIRRAVDKHPEFISSVREFADADPSHRKIFVHGLSWDTTAETLTAEFCKYGEIEECKAVT
DRVSGKSKGYAFILFKHRSGARRALKQPQKKIGNRTTSCQLASQGPVPAPPPTAPPVSEY
TQRKIFVSNVSADLDPEKLLEFFKQYGEVEEGPLGLDKQTGKPKGFSLFVYRSVESARKA
LEEPHKNFEGHVLHCQKAIDGPKSTKGGYGGGTSGGHHQQYQQHQHQQGHQIQSHFHHAK
KGKYSSGGSETGHLMAPSGPTAVGFNPGVAAGGFNPAAAAPALNPALGQALTALLAGQGG
LGLGNLLGGLSGAPVNQGTPAAGYGNQVAGGYGVQGGYQNPQMGQGGAGRNQPGSGAPYM
GH
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggccaaaaagcgaaagcaacgatcctccgaaccccaacccaccaaaacaacgccggat
cctcaaccaatccaacaacaacccgaatatgtacccgacgaagatccgaaccgcaaagta
gaagaggaactgcaactacaggaagtggaagaggaagtagaagtggaagaagaagttgaa
gtagaagaggaagttgaagaagaagacgacgatgacgacgatgaagaagctcaaaatcaa
accctagtcggttcctctaacgccaacggagccccgaaagaaacgggtcaagaagaggat
ttggacgacgagccgttcgagaaacttctggaaccattcgggaaagatcaattgattacc
cttatcaggagagccgttgataagcacccggaatttatctcctcagttcgggagttcgca
gatgcggacccgtcccatcggaagatcttcgttcatgggctaagttgggataccactgcg
gaaaccctcaccgccgaattttgtaagtatggggaaatcgaagaatgcaaagctgttacc
gatagggtttctgggaaatctaaaggttacgcctttattctatttaagcatcgtagtggg
gcacgccgggctttgaaacaaccccagaagaagattggaaatcgaactacttcttgccag
ttggcttcacaggggccggttccggcgccgcctcctacggctcctcctgtttccgagtat
actcaaaggaagatttttgttagcaatgtgtcagctgacttggacccggagaagttgctt
gagttttttaaacagtatggggaagttgaggaaggtccattggggctcgataagcagacg
gggaaaccaaaggggttttccctttttgtatacaggtcggttgagagtgcgaggaaagcg
ttagaagagcctcataaaaattttgaaggtcatgttttgcattgccaaaaagccattgat
gggccgaaatcgactaaagggggttacggaggaggtacttccggtgggcatcatcagcag
taccaacagcatcagcatcagcaaggacatcagattcagtctcatttccatcatgctaag
aagggaaagtactcatctggtggatcagagactggtcatttgatggctccatctggacct
actgcagttgggttcaaccctggagttgctgctggtgggtttaaccctgctgctgctgca
cctgctttaaacccagcgcttggacaggctttgactgcattgcttgctggccagggtggt
ttggggcttggtaatctgcttggagggcttagtggcgcccctgtgaaccaagggacacct
gctgcagggtatgggaatcaggttgctggaggctatggagtgcagggtggatatcagaac
ccacagatgggtcagggcggtgctggtaggaatcaacctggtagtggtgctccttacatg
ggacattag

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