Gossypium hirsutum (upland cotton): 107962870
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Entry
107962870 CDS
T04793
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107962870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107962870
03041 Spliceosome [BR:
ghi03041
]
107962870
03032 DNA replication proteins [BR:
ghi03032
]
107962870
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
107962870
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
Sm proteins
107962870
U2 snRNP components
107962870
Complex B
U1 snRNP components
107962870
U4/U6.U5 tri-snRNP components
107962870
Complex C
U2 snRNP components
107962870
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
107962870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
107962870
NCBI-ProteinID:
XP_016754915
UniProt:
A0A1U8PUU3
LinkDB
All DBs
Position
A02:32870516..32872195
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKISQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKSSSLGVGRGRAVAMRAKAQAAGRGT
TGGRGVVPSVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagcttgggcataccagtgaagctactgcacgaggcatccggccacgtggta
acggtggagcttaagagcggagagctttacagaggaagcatggtcgaatgcgaggataac
tggaattgccagctcgagaacatcacctacaccgctaaagatggaaagatatcacagctt
gagcatgttttcattcgaggcagtaaagtcaggtttatggtcataccggacatgttgaag
aatgctcctatgttcaaacgcctcgatgctaaaatcaagggtaagagctcatctctagga
gttggcagaggtagagctgttgcaatgagagccaaagctcaagctgccgggcgtggcaca
acaggtggtagaggcgttgtgccatcggttcgtaggtaa
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