Gossypium hirsutum (upland cotton): 107962898
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Entry
107962898 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107962898
09122 Translation
03013 Nucleocytoplasmic transport
107962898
03015 mRNA surveillance pathway
107962898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107962898
03041 Spliceosome [BR:
ghi03041
]
107962898
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107962898
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107962898
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107962898
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107962898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
107962898
NCBI-ProteinID:
XP_016754939
UniProt:
A0A1U8PUW5
LinkDB
All DBs
Position
A06:37091182..37095946
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AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPTPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKVHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTSDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacgagggacaacgatgcttacgaggaagagcttctcgactacgaggaagaa
gaagagaaagcacctgactccgtgactgctaaagtcaacggcgaggccgggaagaagggc
tatgttgggattcacagttcaggattcagagacttccttttgaagccagagcttcttcgg
gcaattgttgactctgggtttgagcacccttccgaagtgcaacatgaatgtattccccaa
gccatactgggtatggatgtcatttgccaagctaaatcagggatgggaaagactgcagtt
tttgttttgtcatcattacagcagattgagccaactccaggacaagttattgccctcgtt
ttatgccatacaagagagttagcttatcagatttgtcatgagtttgagaggttcagtact
tacctgcctgatattaaggttgctgtcttctatggtggtgtcaacgtcaaagtacacaaa
gatctgctgaaaaatgaatgcccccacattgttgttgggacacctggaaggatattggct
ctggctagagacaaggacctttcattgaagaatgtcaggcatttcattcttgatgaatgt
gacaagatgcttgaatcactcgacatgaggagagatgtgcaggaaattttcaagatgacc
ccccatgataagcaagttatgatgttttctgctacgctcagcaaagaaattcgccccgtt
tgcaagaaatttatgcaagatccaatggaaatttatgtggacgacgaggccaagttgacc
cttcacggtcttgtgcagcactacatcaaattgagtgagctggagaaaaaccgcaagttg
aatgacctccttgatgcattggacttcaaccaagttgttatctttgtcaaaagtgtgaac
cgagctgctgagttaaacaagttacttgtagagtgtaattttccttctatatgcatccac
tctggcatgtcccaggaggaaaggctgactcggtacaagggtttcaaggaggggcataaa
agaattctagtggccacagatttggttggaaggggaattgacattgaacgtgttaacatt
gtcatcaactacgatatgccagattctgctgatacatacctgcacagggttggtagggct
ggtaggtttggtaccaagggtcttgcaattacatttgtttcatctacttcagattctgat
gtgctcaatcaggtccaggagaggtttgaggtggatataaaggagcttcctgagcagatt
gatacatctacatacatgccatcataa
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