KEGG   Gossypium hirsutum (upland cotton): 107962976
Entry
107962976         CDS       T04793                                 
Name
(RefSeq) lysine-specific demethylase 5D isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ghi01009]
    107962976
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ghi03036]
    107962976
Enzymes [BR:ghi01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     107962976
Protein phosphatases and associated proteins [BR:ghi01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     107962976
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    107962976
SSDB
Motif
Pfam: JmjC PLU-1 JmjN PHD zf-C5HC2 ARID KDM5_C-hel PHDvar_NSD BT_3657-like_N
Other DBs
NCBI-GeneID: 107962976
NCBI-ProteinID: XP_016755063
UniProt: A0A1U8PXG9
LinkDB
Position
A08:complement(118366196..118380446)
AA seq 1843 aa
MGKGRPRAVETGQNLTVSSTGSLNIQSGPVYYPSEEEFRDPLGYIYKIRPEAEPYGICKI
VPPKSWNPPFSLNLDSFTFPTKTQAIHQLQARPASCDSKTFELEYNRFLEGHCGKKLKKR
VIFEGEELDLCKLFNAVRRYGGYDKVVKGKKWGEVFRFVRSGKKISECAKHVLYQLYREH
LYDYEGYYNRLNRERAKSYKRGINEDAKNEKKAKIYSSKRRRKNSDHRNVKVCKVEEEDH
DQICEQCRSGLHGEVMLLCDRCNKGWHIYCLSPPLKQVPPGNWYCFECLNSDKDSFGFIP
GKQFTLEAFRRLADRANKKWFGSGCASRVQIEKKFWEIVEGLAGDVEVLYGSDLDTSVHG
SGFPRVNDQRPESVEPKAWDEYCKSPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGML
FSAFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEASAFEKVMRDCLPDLFDAQPDLLFQL
VTMLNPSVLRENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGG
SGAELYQLYRKAPVLSHEELLCVVAKQSDWEKNASTYLRKELLRIYKKERTFRERLWLSG
ITRSSPMSPRRSSEFVGTEEDPTCIICKQYLYLSAVVCRCRPSAFVCLEHWEHLCECKSS
KHRLLYRHTLAELADLVLIVDKHESEEMPQSDSLLRNISSFSELNSLKKKVKGAHVTHAQ
LAEQWLSRACKIFQSPFSGDAYTTLLKEAEQFLWAGAEMDSVRDVVKNLTAAQKWVQGIR
DCLSKIENWSAGGDFEKVAHKWVKKLLSVDPVPCNEPGYHKLKHCAEEANLLVHDIDAAL
STFSKLEELELLYSRACSSSIHVEQSQKLSQKISLVKVWIDNARKAISNEQPAAVEVDIL
YKLKTEILELQVQVQEKEMIFDLVSQAESCQARCRSLMSGSVTLKNVEVLLQEMASFSVN
IPELALLKQYQIDASLWITKLNDILINIHQREDQQSVIDELNRILEDGESLKIQVDELSL
VKIELKKACCREKAIKARNSKMALAFLQQLLADAVVLQIEREDLFLSLSRELAGALQWEE
RAKDILACKAQMSEFEDLIRMSEDIVAIMPSLGDVKAAILVANSWLNNSKPFLEPDLSGS
STSRSLLKLDDLKELVSQSRFLKITFKQQNVLETILENSKKWQHDACSLLQDVECLYSVT
DIGDGRSNVLILKIEHIVNLIESVSKAGLSFGLDFPEMLKLQNACSTLHWCSKVLSFCYL
MPSYEDVGSLMNISEQLSIMHSSCNLLSSLIFGAKWLKKVSEVISAPVKRNACKLIDAEE
MLAAYQDISVAFPMMFAQLTEATCKHRLWQEQVHQFFSLELGERSWSQLMQLEEYGKASF
FTCPEVDIVVSEVEKVEKWKQRCMDAVKTFAGDESLLLCALQKIKESLDRSLYIYEKSES
FGGVCLYMCCMSGSEDWDFLTCSTCKDCYHLQCLEYRRNNAEEAYTCSNCQLLAGGLIPP
NRCGFLRHNGKYSDLKLLSDLLFVDEKFCVRIEEREILQQIVDQAYACKKCLTEILDFEM
SCYNKDQFTAVGKKLTTAWKAFGVAGVYDHQSYCDLERALARFSWRFQVAKLLDALEKDI
EKPSVQQIYQHLKEGDAMNISPEDHLRLKLSELKDIGLQWVDRAKKVAADCGSLGLDGVY
ELITEGERLPVCLKKELELLRARSRLHCICRKPYDERSMIVCGRCDEWYHIRCVNLVFPP
KVYICAACMPGTQHLVSSFDSLMDHERCTVEPKTPSPRHKKPRTGPKKSESSATQKMLIG
DENGSGIGHLRWRNRKPFGRAAKKRAELDSLTSFFHRPQPIIT
NT seq 5532 nt   +upstreamnt  +downstreamnt
atggggaaggggagacctagggcagttgaaacagggcaaaatttgactgtttcatctact
gggtcattgaatatacagtcggggccggtttattaccctagtgaagaggaatttagggac
ccattagggtatatttataagatcaggcctgaggctgagccatatgggatttgtaagatt
gttcctcctaaatcttggaaccctccattttcgttgaacctggattcttttacttttcct
accaaaacacaagcaattcatcagttgcaggcacggcctgcttcgtgtgattcaaagact
ttcgagttagagtataataggtttttagaaggacattgtggtaagaagttgaagaagagg
gtgatttttgaaggggaggagttggatttgtgtaaattgtttaatgcagtgaggaggtat
gggggctatgataaggtcgtgaaggggaaaaaatggggggaggtttttaggtttgtgagg
tcagggaagaagatttcggagtgtgctaagcatgttttatatcagttgtatagagagcat
ttgtatgattatgaaggttattataaccggttgaatcgggagagggcgaagagttataag
agaggcattaatgaggatgcaaagaatgaaaagaaggctaaaatttatagctccaagagg
agacggaagaatagtgaccataggaatgttaaggtctgtaaggtggaggaggaagatcat
gatcagatatgtgagcaatgcagaagtgggttacatggggaagtgatgctactatgtgat
agatgtaataagggttggcatatatattgtctgtcaccaccgttgaagcaggtcccacca
ggtaactggtattgctttgagtgcctgaattctgacaaagatagttttggttttattcct
ggaaaacaatttacattggaagcttttaggcgtttggctgatcgagccaataagaaatgg
tttggatcaggatgtgcttcgagggtacagatagagaaaaagttttgggagatcgtggag
ggtttggcaggtgatgtggaagttctgtatggaagtgacctggatacttctgttcatggg
agtggttttccacgtgtaaatgaccagaggccagaatctgttgagcctaaagcatgggat
gaatactgtaagagtccgtggaatctcaataacttgcccaagctgaaaggttcaatgctg
agggctgttcatcataacattactggtgtcatggttccctggctgtatattggaatgctg
ttctcagctttctgctggcattttgaagatcattgtttttattcaatgaattaccttcac
tggggagagcctaaatgttggtacagtgtccctggtagtgaagctagtgcttttgagaag
gtgatgcgggattgtctccctgatctgtttgatgcgcaacctgacttgctgtttcagctt
gttaccatgttaaatccttctgtcctgcgagaaaatggtgtcccagtctacagtgtgcta
caggagccaggaaattttgtcattactttccctagatcttaccatggaggattcaatttg
ggtttaaattgtgcagaggcagtaaattttgctcctgctgattggttaccccatggtggg
tctggggcagagctgtatcagttgtatcgtaaagctccagttttatctcatgaggagctt
ctttgtgtggtagccaagcagagtgattgggaaaaaaatgcatcaacttatttgagaaaa
gaattgctcagaatatataagaaagaaaggacatttagggagaggctttggctaagtggc
ataacaagatcatctcccatgtctcctcggagatcttctgaatttgtgggcacagaagag
gatccaacatgcattatatgcaagcagtatttgtatctttctgctgttgtttgccgctgc
aggccatctgcttttgtctgcctggagcattgggagcacctctgtgagtgcaaatccagt
aaacatcgtcttctgtatcgtcatactctggcagaattggctgatttggtgcttatagtg
gacaagcatgagtcggaggagatgccacaaagtgatagtttactcaggaacatctcatct
ttcagtgaattgaattctttaaaaaagaaggtgaaaggtgcccatgttactcatgctcaa
cttgcagagcaatggctttcacgggcatgtaagatttttcagagtcctttttcaggtgat
gcatatactactctgttgaaggaagctgaacagtttctctgggctggtgccgagatggat
tccgtacgcgatgtggtgaagaatctgactgcagctcagaaatgggtgcaaggaataaga
gactgtctttctaaaattgaaaattggtctgctggaggtgattttgagaaagtggctcat
aaatgggttaagaaattgcttagtgttgatcctgtgccctgtaatgaacctggatatcat
aagttgaagcattgcgccgaagaggccaatttgttggttcatgatattgatgctgcttta
tcaacattctctaagcttgaagagttggagttgttgtattccagggcttgcagctcatca
atacatgtagaacaaagtcagaagttatcacaaaaaatctctttggtgaaggtatggata
gacaatgcaagaaaagccatctccaatgaacagcctgcagcagttgaggttgacattctt
tacaagttaaaaacagagatattggagcttcaggtccaagttcaggaaaaagaaatgatt
tttgatcttgtaagccaggctgaatcatgtcaagcccggtgtagatctttaatgagtggt
tctgttactctaaagaatgtggaagtgcttcttcaagaaatggcaagtttcagtgttaac
ataccagagttggcacttctgaagcaataccagattgatgcttctttgtggatcacaaag
ttaaatgatattttgataaatatccatcagagagaggatcaacaaagtgttattgatgaa
ttaaatcgtattttagaagacggagaatcactgaagattcaagttgatgagttgtcactt
gtgaagattgagttgaagaaggcttgttgcagggaaaaggcaataaaggcacgcaattca
aaaatggctttggcctttcttcagcaactgttggcagatgctgttgttttgcaaattgag
agagaggatttatttcttagtttgtctagagaactagctggtgctctgcagtgggaagaa
agagctaaggatatacttgcttgcaaggctcagatgtctgaatttgaggatcttataagg
atgtcggaggacatagttgctataatgccttcattaggtgatgtcaaagccgcaatattg
gtggcaaactcatggttaaataatagcaagccatttttagaacctgatttgtctgggtca
tctacatctcgttctttgctgaaacttgacgatctgaaggagttggtttctcagtcaaga
tttcttaagataacttttaagcaacaaaatgtgcttgaaacaattttggaaaatagcaag
aaatggcagcatgatgcctgttccctactgcaagatgtggagtgcctgtatagtgtgact
gacattggtgatggcaggagcaatgttcttattttgaaaattgaacatattgttaacttg
attgaatctgtctcaaaagctggtttatcttttggactggattttcctgagatgctaaag
cttcaaaatgcttgttcaacgctgcattggtgcagtaaagtcctttctttctgctatttg
atgccttcttacgaggatgttgggagtttgatgaatatctcagagcagctttctattatg
cattcttcatgtaatttgttgagctccttaatttttggagcgaaatggcttaagaaggtt
tcagaggtgatttccgcacctgtgaagcgtaatgcatgcaaattgattgatgctgaagaa
atgcttgctgcatatcaggatattagtgttgccttcccaatgatgtttgcacaacttaca
gaggctacctgcaaacataggttgtggcaggagcaggtgcatcagttttttagtttagag
ttgggggagcgatcgtggtctcaattaatgcagctcgaggagtatggaaaagcttctttc
tttacatgtccagaggtagatattgtcgtgtctgaagttgaaaaggttgagaagtggaag
cagcgctgcatggatgctgtaaagacctttgctggagatgagagcttactgctctgtgcc
ttgcagaagatcaaagagtccctagatagatctctgtatatatacgaaaagtcagagagt
tttggaggagtatgtctctacatgtgctgtatgagtggttctgaggattgggatttttta
acatgttcaacatgcaaggactgctaccatttgcagtgcctagaatatagaagaaataat
gcagaagaagcatatacgtgctcaaattgtcagcttcttgcgggtggattaatacctccc
aatagatgtggcttcttgaggcataatggcaagtattcagacttgaagcttctctctgat
cttctctttgttgatgaaaagttttgtgtaaggattgaagaaagagagatattacagcaa
attgtagaccaagcttatgcttgcaaaaagtgtttgacagagatactggactttgaaatg
tcttgctataataaagatcaatttactgctgttggtaaaaaactcactactgcttggaag
gcctttggagtggcaggtgtatatgatcatcaaagttattgtgatcttgagcgggcatta
gctagattctcatggagattccaagttgctaaattgttagatgctttagagaaggatata
gagaagccttcagtccaacagatttatcagcacctgaaagagggagatgcgatgaacatt
tcacctgaagatcacttaagattgaagctttccgaattgaaggacattggattgcagtgg
gtggatcgtgccaagaaggttgcagcagattgtgggtcacttggcttagatggagtttat
gaacttatcacagagggggaaaggttgccagtttgcttaaagaaggaacttgagttgtta
agagcccgaagtaggcttcattgcatttgtcgaaagccatatgatgaaagatcaatgatt
gtttgcggtcgatgtgatgagtggtaccacataagatgtgttaatttagtgttcccacca
aaggtttatatctgtgcagcatgtatgcctgggactcaacatttggtgtcctcttttgac
tcattgatggatcatgaaagatgtacggtggagccgaaaaccccatctcctcggcataaa
aaaccaagaacgggaccaaagaaatcggagtccagtgccacacaaaaaatgctgattggt
gatgagaatgggagtgggataggtcatttgaggtggcgaaatcggaagccttttgggaga
gcagcgaagaagcgtgctgagcttgatagtcttacttcatttttccatagaccacaacca
ataatcacataa

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