Gossypium hirsutum (upland cotton): 107963306
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Entry
107963306 CDS
T04793
Name
(RefSeq) serrate RNA effector molecule-like isoform X1
KO
K27103
serrate RNA effector molecule
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107963306
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
Other processing factors
107963306
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ARS2
SERRATE_Ars2_N
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
107963306
NCBI-ProteinID:
XP_040954701
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Position
D08:complement(62990605..62996167)
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AA seq
741 aa
AA seq
DB search
MAKVINMPVDSLDRRRGGDRKDNNNNNNRQLPPSDDPNLSPPAPPPPRRRDRDSRERRDR
DYYDRNRSPPPPPTRERDYKRRSSISPPPPPLNYRDRRHSPPPRRSPPYKRSRREDGGYE
GRRGSPRGGFGPGDRRFGYDYGGGYDREMMGRPGYPDDRPHGRYFGRSSGGYQDWDSGRG
RYGDASNSGTTQSKIFREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRAFFD
AHKDEEWLRDKYHPTNLVTVIERRNELARKVAKDFFLDLQSGTLDLTPGVNALSANKSGQ
TSEPNSEDETDIGGKRRRHGRGPTKETDILSLAPKAHLVSSDPRRIQIDIGQAQGLVRKL
DSEKGIEENILNGSDNDKISRDKSHGSFAGPVIIVRGLTSVKGLEGVELLDSLITYLWRV
HGVDYYGMIETSEAKGFRHVRAEGKSSDITSNGSEWEKKLDSYWQDRLRGQDPLEVMTAK
DKLDAAAVESLDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELT
SKVREELYFQNYMNDPDAPGGTPVMQQPIPKDKPQRRKVMENRLKDERGLRRERDNRANG
SDRFDRSENPQSSDFPSNNDGPDGGNHDDPMFDAFGGQGMHVAAPFSSDIAPPPVLMPVP
GAGPLGPFVPAPPELAMQVFRERGGPPFEGNSRSGRPGPNLSGPAPFLLPPGFRQDPRRL
RSYQDLDAPEDEVTVIDYRSL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagtcataaacatgccggtcgattctctagatcgccgcaggggcggcgaccgt
aaagataacaacaataataacaacagacagcttccgccatctgacgatcccaacttatct
cccccagctccgcctcctcctcgacgccgcgaccgagattcgcgtgagcgacgggaccgt
gactactacgatcgcaaccgctctcctccgcctccgccgaccagagagagagattacaaa
cggcgtagtagcattagccctccaccaccgccgttgaattacagggataggagacactcg
cctccgcctcggaggtctccgccttataagaggtctaggcgtgaggatggagggtatgaa
gggaggagagggagccctagaggcggatttggacccggcgatagaaggtttgggtatgat
tatggtggtggatatgatcgcgagatgatgggcagacccggttaccctgatgataggcct
catggccggtactttggtcgctcttctggtggttatcaagattgggattcaggccgtggt
agatatggtgatgcttctaattcagggactactcaaagtaaaattttcagagaaggattg
atgtcatacaagcaattcattcaagagcttgaggatgatatactaccagctgaagctgag
cgcaggtaccaagaatacaagtcagagtatatatctacccaaaaaagagcattttttgat
gcccacaaagacgaggaatggttgagagacaaatatcatccaacaaacttggtcactgtt
attgaaaggaggaatgagcttgcacgcaaagttgcgaaggactttttccttgatctgcag
agtggaacactggacttaacacctggtgtcaatgctttgtcagcaaataaatccggacaa
accagtgaacctaattctgaagatgaaacagacattggtgggaaaagaaggcggcatggt
aggggacctactaaagaaactgatattctttctctggctccaaaggctcatctagtcagt
tctgatcccagaagaattcagattgacattggacaagcacagggccttgtacgtaaactg
gactctgaaaaaggaattgaggaaaatattttaaacgggtcggacaatgacaaaataagt
agggacaaatctcatggtagttttgcaggcccagtgattattgtacgtggcttgacttct
gtaaaaggcctggaaggtgttgagcttcttgatagtcttataacttacttgtggcgtgtc
catggtgtggattactacggtatgattgaaactagtgaagctaagggttttaggcacgtg
agagcagagggaaagagttctgatattactagtaatgggtctgagtgggaaaagaaactg
gactcatactggcaagatagattgagaggtcaagatcctttggaagtaatgactgctaag
gacaaactagatgctgccgctgttgaatctttggatccttttgtccggaagataagggat
gaaaagtatggttggaagtatggttgtggtgctaagggttgcacaaagctctttcatgct
gcagaatttgtgcacaagcatcttaaactgaaacatccggaacttgtgatcgagctaacg
tctaaagtgcgtgaagagctctatttccagaactacatgaatgatccagatgcgcctggt
gggacacctgttatgcagcaacccataccgaaggacaagcctcagagacgtaaagtaatg
gaaaatcgcttgaaagatgaacgtggcttacgcagagaacgtgataatcgagctaatggt
agtgacagatttgatagatctgagaaccctcaatcaagtgattttccgtccaacaatgat
ggtcctgatggggggaatcatgatgatcctatgtttgacgcttttggtggacaagggatg
catgttgcagctccattttcttcagatattgcacctccaccagtattgatgcctgttccc
ggtgctggtccattggggcccttcgttccagctccacctgaacttgcaatgcaagtgttc
agagagcggggtggtcctccttttgaaggcaatagtagaagtggacgccctggacctaat
ttaagtggaccagccccctttcttttgcctcctggcttccgacaagatcctcggcgctta
cgaagttaccaagacttagatgcacctgaggacgaagtcacagttatagactatcggagt
ttgtag
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