KEGG   Gossypium hirsutum (upland cotton): 121202875
Entry
121202875         CDS       T04793                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3-like isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ghi04812]
    121202875
Cytoskeleton proteins [BR:ghi04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     121202875
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_DCAF4 Beta-prop_SCAP eIF2A Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_HPS5 Beta-prop_IP5PC_F Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 121202875
NCBI-ProteinID: XP_040952260
LinkDB
Position
D06:66058832..66065343
AA seq 938 aa
MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWSIGKPTSLMMPIKVSLC
NNVQSLCGHTSPVESLAFDLAEVFVLAGASTGVIKLWDLEETKMVRGLTAHRSNCTAMEF
HPFGEFFASGSMDTNLKIWDIRKKGCMHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKV
WDLTAGKLLNEFKFHEGHIRSIDFHPLEFLLATGSADGTVKFWDLETFELIGSSRPEATG
VCSITFHPDGKTLFCGLDDGLKVYSWEPVVCHDSLDIGWSTLGDLCINEGKLLGFSYYRN
SVGVWGADVSHIEPYGRNDHSEKKFNLDGSYSSEKAGSGMRSTLGSQPLSLYVTKEIKNI
YVDTAGSNTIAAPKDGSLSSTEVVLPLAAGEISNPEAEEQSPGTGVNAKSNGQSGNNPVV
KKTTNSGKESITFSRTKPGMLLRPVHVRKPSVNKFEVEKLSAVVESGRLDTAMDMNSRTS
LVLEDGAKKPSDEKDSNIETVTEKPEKMLSPQTPSNQETRNESLDHNKGSNSVKFVNGVA
VVRGRTRSLVERFERRDLLNCSGDLATDSIAPAVPEADKTPAIIEGGTKISKTQPISAND
VSTAESQSSRTEPASSCKGGITASPIPTRESTPTSVGIISGDQISRRESTFTPGRIIARN
QNSRKESTFASDRIVTINRISRRESTSTSDGVITKNQITRNESTSISDGIISRNQHSRKE
AAAANDMSGPNGLYTENQISRRGFNSGNDRNVTNIESQISKDESISTNDGNLTESLMQTH
DTFVSTLRSRLTKLQVVRHFWEKNDIKGSIGALRKLPDHSVQADVIGVLMEKMEILNLDL
FSGLLPVLMGLLDSKMERHTNISLEMLLKLVAVFVPMIRSTVSARRSVGVDLHAEQRREC
CNQCFMQLQKIQKLLPPLVRRGGTIARGAQELNLALQE
NT seq 2817 nt   +upstreamnt  +downstreamnt
atggcgaagcgtggatacaagctgcaggaatttgtggctcatacggctaatgtgaattgt
ttaagtatgggaaaaaagacacgtaggcttcttattacaggcggagatgatcataaagtc
aatgtttggtcaattgggaaacccacttctttaatgatgcctataaaggtatccttatgt
aataatgtgcagagtctttgtggtcatactagtccggtcgaatctttagctttcgatttg
gccgaagtttttgtgcttgccggtgcatctacaggtgtgattaagctttgggatctcgaa
gaaacaaagatggttcgtggacttactgcacatagatctaattgcactgctatggagttt
catccgtttggcgagttttttgcatccggttccatggatacaaatttgaagatatgggat
attagaaaaaagggatgcatgcacacgtacaagggtcatactcgaggcattagtacgatt
cgattcactcctgatggccgttgggtagtttctggtggatttgataatgttgtaaaggtg
tgggatcttactgctggaaagctcttgaatgagttcaagtttcacgaaggacatattcgc
tccatagatttccatcctcttgagttcctcctcgccacaggttcagcggatggaacagta
aaattctgggacttagaaacttttgaactgatcggatcttcaagacctgaggctaccggg
gtttgctcgattacctttcatcctgatgggaaaacccttttctgtggattggatgatggt
ttgaaggtttattcatgggagccagtggtttgtcatgattctcttgatatcggatggtca
acacttggtgacctctgcatcaatgaaggcaaacttttggggttctcgtactatagaaat
tctgttggagtttggggagcagatgtatcgcatatcgagccatatgggcgaaatgaccat
tccgagaagaaatttaatctcgacggaagttattcatcagagaaagcagggagcggcatg
agatcaactttgggatcacagcccctatctctttacgtgaccaaggaaataaagaacata
tatgttgacacagctggcagtaatacgattgcagcaccaaaagacggctctttgagttct
acagaagtggtacttccgttggccgccggtgaaataagtaatccagaagctgaggagcag
agtcctggaacaggagttaatgctaaatctaatggacaatcaggtaacaaccctgtcgtg
aaaaagactacaaattcgggaaaagaatctatcaccttttcaaggacaaaaccaggaatg
ttgctcagacccgttcatgttaggaaaccatcggtcaacaagttcgaggttgaaaagcta
tcagctgtggttgaatctggaaggttagacactgcaatggatatgaattctcgaactagt
cttgtattggaagatggagctaaaaaaccctctgatgaaaaggattcaaatattgaaacc
gttactgagaaacctgaaaagatgttatcaccgcagacaccctctaatcaagaaactcgt
aatgaatcactcgatcacaacaaaggctcaaactccgtcaaatttgtgaatggagtggct
gttgttcgaggaagaacacgtagtctggttgagagatttgaacgaagagacttactaaac
tgcagtggtgatctggcaactgacagtatagctcctgctgtacctgaagcagataaaaca
ccggccataatcgaaggagggacaaaaatatctaaaacacaacctatatcggccaatgat
gtaagtactgccgaaagtcaaagttctagaactgaaccagcttctagctgcaagggaggc
attactgcaagtccgattcctacaagggaatcaacccctacttccgttgggatcatttct
ggagatcaaatttctagaagggaatcaaccttcactcccggtaggataattgctcgaaat
cagaattctagaaaggaatcaaccttcgcttctgataggatcgttaccataaatcgaatt
tctagaagggaatcaacctctacttctgatggggtcattacgaaaaaccaaattactcga
aacgaatcgacttccatttctgatgggatcatttctagaaatcaacattctagaaaggaa
gctgctgctgctaatgatatgagtggaccaaacggtctatatactgaaaatcaaatttct
aggaggggattcaattccggtaatgatcggaatgttactaatatcgaaagccaaatttca
aaggacgagtcgatatctactaatgacggaaacctgaccgaaagtctcatgcaaacgcat
gatacattcgtaagtactcttcggtcacgcttgacaaagttacaggtggtgcggcatttt
tgggaaaagaatgacattaaaggttccattggtgcactgcgtaaactgccagatcattct
gtgcaagctgatgttatcggtgttctcatggaaaaaatggagattctcaacttagatctg
ttttccggcttgcttcccgtgcttatgggcttattagatagtaaaatggaaaggcataca
aatatctcattggagatgctcctaaagcttgtagctgtttttgttccaatgatacgctca
actgtctcagcccgacgtagtgtcggtgttgatcttcatgctgagcagaggcgagaatgt
tgcaatcaatgttttatgcaattacaaaagattcaaaaacttctcccaccactcgtaagg
agaggcggtacgatagcaagaggtgcgcaggaattgaatctggctcttcaagaatga

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