Gossypium hirsutum (upland cotton): 121203562
Help
Entry
121203562 CDS
T04793
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121203562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121203562
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121203562
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
121203562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
ECR1_N_2
S1_TP0910
Motif
Other DBs
NCBI-GeneID:
121203562
NCBI-ProteinID:
XP_040941452
UniProt:
A0ABM2ZFJ1
LinkDB
All DBs
Position
A13:103259251..103262015
Genome browser
AA seq
195 aa
AA seq
DB search
MEEADEMVTPGEVLGKATDLKAGKGAYAASHNNTIYASLTGFRRIQAPPPASNDKRPTVE
VTGHKAHGPVPEPGSVVIARVTKVMARTASADIMCVGPKSVREKFTGIIRQQDVRATEID
KVDMHLSFHPGDIVRAVVLSLGDARAYYLSTAKNELGVVSAESSAGATMVPISWTEMQCP
LTGQIELRKVAKVVN
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagcagatgagatggttacgccaggagaggtattaggaaaagccactgatctg
aaagcagggaaaggagcgtatgccgcctctcacaacaacaccatctacgcttcccttacc
ggcttccgccgcatccaggcccctcctcccgcttccaatgacaagagaccaactgtggaa
gtaactggtcacaaagcccatggtcctgttccagaacctggttcggttgtcattgcccga
gttacaaaggtgatggctaggacagcatcagctgatattatgtgtgttggtccgaaatct
gtgagagaaaaattcactggtataattaggcaacaggatgttagagctactgaaattgac
aaagtggatatgcatttgtcatttcatcctggcgatattgtcagagcagtagtgctgtct
cttggagatgcacgggcttattacctatccacggctaagaacgaattgggcgtcgtgtct
gctgaaagctcagctggtgcaacaatggttccgataagttggactgagatgcagtgccca
ttgactggccaaatcgagctaaggaaggtggcgaaggtcgttaactaa
DBGET
integrated database retrieval system
