KEGG   Gossypium hirsutum (upland cotton): 121204699
Entry
121204699         CDS       T04793                                 
Name
(RefSeq) UBP1-associated protein 2A-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121204699
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    121204699
   03041 Spliceosome [BR:ghi03041]
    121204699
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     121204699
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     121204699
Spliceosome [BR:ghi03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    121204699
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Cut8
Other DBs
NCBI-GeneID: 121204699
NCBI-ProteinID: XP_040930983
LinkDB
Position
A08:complement(120651453..120656227)
AA seq 482 aa
MAKKRKQRSSEPQPTKTTPDPQSIQQQPEYVPDEDPNPKVEEELQLQEVEEEVEVEEEVE
VEEEVEEEDDDDDDEEAQNKTLVGSSNSNGAPEETGQEEDLDDEPFEKLLEPFGKDQLIT
LIRRAVDKHPEFISSVREFADADPAHRKIFVHGLSWDTTAETLTAEFCKYGEIEECKAVT
DRVSGKSKGYAFILFKHRSGARRALKQPQKKIGNRTTSCQLASQGPVPAPPPTAAPVSEY
TQRKIFVSNVSADLDPEKLLEFFKQYGEVEEGPMGLDKQTGKPKGFALFVYRSVESARKA
LEEPHKNFEGHVLHCQKAIDGPKSTKGGYGGGTSGGHHQQYQQHQHQQGHQIQSHYHHAK
KGKYSSGGSETGHLMAPSGPTAVGFNPGVAAGGFNPAAAAPTLNPALGQALTALLAGQGG
LGLGNLLGGLSGAPVNQGTPAAGYGNQVAGGYGVQGGYQNPQMGQGGAGRNQPGSGAPYM
GH
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggccaaaaagcgaaagcaacgatcctccgaaccccaacccaccaaaacaacgccggat
cctcaatcaatccaacaacaacccgaatatgtacccgacgaagatccgaaccccaaagta
gaagaggaactgcaactacaggaagtggaagaggaagtagaagtggaagaagaagttgaa
gtagaagaggaagttgaagaagaagacgacgatgacgatgatgaagaagctcaaaataaa
accctagtcggttcctctaactccaacggtgccccggaagaaacgggtcaagaagaggat
ttggacgacgagccgttcgagaaacttctggaaccattcgggaaagatcaattgattacc
cttatcaggagagccgttgataagcacccggaatttatctcgtcagttcgggagttcgca
gatgcggacccggcccatcggaagatcttcgttcatgggctaagttgggataccactgcg
gaaaccctcaccgccgaattttgtaagtatggggaaatcgaagaatgcaaagctgttacc
gatagggtttctgggaaatctaaaggttacgcctttattctatttaagcatcgtagtggg
gcacgccgggctttgaaacaaccccagaagaagattggaaatcgaactacttcttgccag
ttggcttcacaggggccggttccggcgccgcctcctacggctgctcctgtttccgagtat
actcaaaggaagatttttgttagcaatgtgtcagctgacttggacccagagaagttgctt
gagttttttaaacagtatggggaagttgaggaaggtccaatggggctcgataagcagaca
gggaaaccaaaggggtttgccctttttgtatacaggtcagttgagagtgcgaggaaagcg
ttagaagagcctcataaaaattttgaaggtcatgttttgcattgccaaaaagccattgat
gggccgaaatcgactaaagggggttatggaggaggtacttccggtgggcaccatcagcag
taccaacagcatcagcatcagcaaggacatcagattcagtctcattaccatcatgctaag
aagggaaagtactcatctggtggatcagagactggtcatttgatggctccatctggacct
actgcagtggggttcaaccctggagttgctgctggtgggtttaaccctgctgctgctgca
cctactttaaacccagcgcttggacaggctttgactgcattgcttgccggccagggtggt
ttggggcttggtaatctgcttggagggcttagtggcgcccctgtgaaccaggggacacct
gctgcagggtatgggaatcaggttgctggaggctatggagtgcagggtggatatcagaac
ccacagatgggtcagggcggtgctggtaggaatcaacctggtagtggtgctccttacatg
gggcattag

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