Gossypium hirsutum (upland cotton): 121206089
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Entry
121206089 CDS
T04793
Name
(RefSeq) nuclear pore complex protein NUP107-like
KO
K14301
nuclear pore complex protein Nup107
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121206089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121206089
03036 Chromosome and associated proteins [BR:
ghi03036
]
121206089
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121206089
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121206089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
VAPB_antitox
AbrB_C
Motif
Other DBs
NCBI-GeneID:
121206089
NCBI-ProteinID:
XP_040932261
LinkDB
All DBs
Position
A09:complement(61605219..61618606)
Genome browser
AA seq
1088 aa
AA seq
DB search
MDVDMETSPSYFDPQDHSAREKFRRYGKRYSNSSISPRQESGISKFNEAKLLYEGQIIHS
PTNAAVLLENIKQEAESFDTDYFEETPAMERSASKRRPSSDGHRTAEIDNGVDSIRRLGS
HALKASKIEDDLLADNGDATFASFASLLDSAFHGVMPIPDLILQFERICRNVSESIRYES
NVRHRVVEDKLRRQKAQLLLDEAATWSLLWYLYGKVTDEPPEELILSPSTSHIEACQFVA
NDHTAQLCLRIVQWLEELASKALDLENKVRGSHVGTYLPNSGIWYHTQRFLKKGASAANT
IHHLDFDAPTREHAHQLPDDKKQDESLLEDVWTLLRAGRLEEACELCRSAGQPWRSATIC
PFGGLDLFPSTEALMKNGKNRSLQAIELESGIGHQWRLWKWASYCASERIFEQNGGKYEI
AVYAAQCSNLKRMLPICTDWETACWAMAKSWLEIQVDLELARSQPGRMEQLKSYGDGIDG
SPGGIDGTSQPSPGPESWPLQVLNQQPRDLSALLQKLHSGEMVHEAVTRGCKEQQRQIEM
NLMLGNIPLLLELIWSWIAPSEDDQNISRPRDPQMIRFGAHVVLVLRYLLAEEIKDTFRE
KLMTVGDRILHMYSLFLFSKHHEELVGIYASQLASHRCIDLFVHMMEVRLNSSVHVKYKI
FLSAMEYLPFSQGDDSKGSFEEIIERLLSRSRETKAGKFDETSDVVEQHRLQSLQKALVV
QWLCFTPPSTITDVKDISAKLLMRALIHSNILFREFALISMWRVPAMPIGAHELLSFLAE
PLKQLSETPDTFEDFVSENLKEFQDWSEYYSCDATYRNWLKIELANAEVSPDELSVEEKQ
RAIMAAKETLDLSFLLLLRERNPWLISWVEHISESMEPLFLELHSTAMLRLPSGESMCPD
ATVCAALMSALYSSATEEVVSERQLTVNVAISSKDSYSIEVMLRCLAVEGDGIGPHILND
GGLLSAVMAAGFKGELARFQAGVTLEISRLDAWFSSKDGSLEGPATYIVQGLCRRCCIPE
VILRCMQVSVSLMESGNPFESHDQLIELVSSSETGFINLFSRQQLQEFLLFEREYSICKM
ELQEEPSS
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgacatggaaacgtctcccagctactttgacccccaagatcactccgctagg
gaaaagtttcgtcgttatgggaaaagatactcaaattctagcatatctccacggcaagaa
agtggcatttcgaagttcaacgaagctaagttgttgtacgagggacagattatccacagc
cctactaatgctgcagttcttcttgaaaacatcaaacaagaggctgagagctttgatact
gattattttgaagaaacacctgcaatggagcggtcggcttctaagaggaggccatcaagt
gatggtcatagaacggcagagattgataatggtgttgattcaatccgcagattaggaagt
catgcactaaaagcttctaagatcgaggatgatttattggcagataatggagacgcgacc
ttcgcttcgtttgcatctctacttgattctgcttttcatggggtaatgccaattcctgac
ctgattttacaatttgagagaatatgccggaatgtttcagagtcaattagatatgaatcc
aacgtacgccatagggttgtcgaggataaattgaggaggcagaaggctcaacttctgctt
gatgaggctgctacatggtctctcctgtggtatctttatggaaaagtgactgatgaacct
cctgaagagctcattctgtccccttcaacatcacatatagaggcttgccaatttgttgcg
aatgatcacacagcacaattatgcctccgcattgttcaatggctagaagaattggcttct
aaagcgctagatctggagaacaaggtgcgaggatctcatgttggtacctatcttcccaac
tctggaatttggtaccatactcagaggtttctcaaaaagggtgcctctgctgctaacact
attcaccacttagattttgatgctccaacacgggaacatgcccatcagctgcctgacgat
aaaaaacaagatgagtctctacttgaggatgtctggactctgttaagggctggaagactg
gaagaggcatgtgagctttgccggtctgctggacagccatggagatctgcaactatttgc
ccattcggagggttagacctatttccttctactgaagccctaatgaagaatggaaaaaat
agaagcctgcaagctattgaacttgagagtggcattggtcatcagtggcgcctttggaaa
tgggcttcctattgtgcatcagagaggatttttgagcaaaatggtgggaaatatgaaata
gctgtatatgctgcccaatgtagcaatttaaagcgcatgcttccgatctgtacggactgg
gagactgcctgttgggcaatggccaaatcatggcttgaaattcaggtagatctagaatta
gctcgttcacaacctggcaggatggaacaattaaaaagctatggagatggtattgatgga
agtccaggaggaattgatggtacctcgcagccttcacctggacctgaaagttggccattg
caagttttgaaccagcaaccacgagacctttccgctcttcttcagaaacttcattcaggt
gaaatggtgcatgaagcagtaactcggggatgcaaggaacagcaacgtcaaattgagatg
aatctaatgttagggaatataccacttctccttgagcttatatggtcgtggatagcacct
tcagaagatgatcaaaacatctccaggcctcgtgatcctcagatgattcggttcggtgcg
catgtagtgcttgttcttagatatctacttgctgaagaaattaaagataccttcagggaa
aagcttatgactgttggtgatcgtattcttcacatgtattcattgtttctattttcaaag
catcatgaagaattggttggcatttatgcttctcagcttgcaagtcatcgttgcattgac
ctctttgtgcacatgatggaggttaggcttaatagcagtgtacatgtcaaatataaaatc
ttcctttctgccatggagtatttaccattttctcaaggggatgattcgaaaggaagcttt
gaagaaattattgagaggcttttgtcacgatcacgagaaaccaaagctggaaaatttgat
gaaacatctgacgttgtggagcaacataggcttcagagtcttcaaaaagctttggttgtc
caatggctctgcttcacacctccctccacaattaccgatgttaaagatattagtgccaaa
cttcttatgcgagcattaatacacagcaatatattatttagggagtttgctctgatttct
atgtggagagtcccagcaatgccaataggtgcacatgaattgcttagttttcttgctgag
cctttgaagcagctttctgaaactcctgatacttttgaggattttgtttctgagaatctg
aaagagtttcaagactggagtgaatactactcctgtgatgcaacgtatcgcaactggctc
aaaattgaattagcgaatgcagaagtttctcccgacgaactttcggtagaggaaaaacaa
agagcaataatggcagccaaagagacgttggatttatcttttttattgctactgagggaa
agaaacccatggcttatttcttgggtggaacatattagtgaatcgatggaacctctattt
cttgaattgcattctactgcaatgctccgcctcccttctggtgaatccatgtgtccagac
gctactgtttgtgctgcattaatgagtgcactttactcttctgcaactgaggaagttgtc
tcagaaagacagttaacagtaaatgttgccatttcttcaaaagacagctacagcattgag
gtaatgttgcgctgcttggcagtggagggtgatggaattggtccacacatcctcaatgat
ggtggccttctcagtgctgttatggcagctggcttcaaaggtgagcttgcgagatttcaa
gcaggagttacattggagatatcccgattagatgcttggttttcaagcaaagatggttcc
ttggaagggcctgcaacgtatattgtgcagggcctctgtcgtaggtgttgtattccagaa
gtcattctccgatgcatgcaggtttctgtttcactcatggagtcaggtaatccttttgaa
agccatgaccagttgattgagctagtctcgagttcggagacagggttcatcaatctcttc
agtcggcaacaattgcaggaatttttattgttcgagagggagtattccatatgcaaaatg
gagcttcaagaggagccttcctcgtga
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integrated database retrieval system
