Gossypium hirsutum (upland cotton): 121207620
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Entry
121207620 CDS
T04793
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2-like isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121207620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
121207620
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121207620
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121207620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
121207620
NCBI-ProteinID:
XP_040933906
LinkDB
All DBs
Position
A10:complement(107131834..107151276)
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AA seq
1178 aa
AA seq
DB search
METQRRKRPGQPPSVKELEELKELFKHHIESFDYMIDEGLEIMLKRVKPVQIFDPNSTKT
LRIWLDHPEIFPPQKDRSSKTSAGALLPFECRQAKISYTGSLHMDVCFQWNGGVVIREKV
NFGEFPIMLRSKRCYLQGANPEKLVACKEEAREMGGYFILNGLERVVRALILPKRNYPMS
LERNSFRERREGYTEKAVVIRCVRDDLSSVTVKLYYLRNGSARLGFWIQGKEYMLPVGIV
LKALIDTNDHEIYTKLTCCYNEKDGDIKGAVGSQLVGERAKIILDEVRHLALFTKDQCLL
HIGEHFQPVMEGMETESYSSVADAVLRNHIFVHLNDNNDKFNLLIFMVQKLFSLVDQTSA
PDNSDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLVEDKINNNGQNFDFCSLKDVKKV
MDKNSSKQIGTAIENLLKTGRLITQTGLDLQQRAGFTVQAERLNYLRFISFFRSVHRGAS
FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSYYNSQGNIRDFFKIR
MSILDVLVGVGMTTSWPKLDHAGPPRALPVLLDGCVIGSLSSGEADKVVAHLRRLKVSAA
SVIPDDLEVGYVPLSLGGTYPGLYLFTSPSRFIRPVKNISIPSSDGKDIEHIGPFEQVFM
EIKCPDGGNGGRSTTFPATHEELMPTAMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAF
SLQALHSRADQKLYHLQTPQTPIVRTKTYTKYGLDDYPSGTNAIVAVLAYTGYDMEDAMI
LNKSAVERGMCRGQIYQTETIDLCDGKSNQGQRIFKREHSDKAISSFVDSDGLPYVGQVI
HGNEPYCSTINQVTNSKRVYNHKGSEMTIVDYVAVDTKNKQQLQKVNIRFRHPRNPIIGD
KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL
HGKFVDATPFSDAVKGANGKTETESESLVDELGSMLRARGFNYHGVEVLYSGVYGTELTC
EIFIGPVYYQRLRHMVSDKYQVRATGQVDQITRQPIKGRKRGGGIRFGEMERDSMLAHGA
AYLLHDRLHTCSDYHIADVCSLCGSILTTAIIQPQKRVVREVGGLPPARAPKKVMCHACQ
TSKGMETVAMPYVFRYLAAELAAMNIKMTIQLSSEAGA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcagaggagaaagagaccggggcagccgccgagcgttaaagagctcgaagaa
ctaaaggagctattcaaacaccatatcgagtcattcgattacatgatcgatgaaggcttg
gaaatcatgcttaaacgcgtcaagcctgtgcaaatattcgatcccaattccaccaaaacc
cttagaatctggctggatcatcctgagatatttccaccacaaaaggatcgatcttcgaag
acgtcagctggagcattgcttccatttgaatgtagacaagcaaaaatttcttatacgggg
agcttgcatatggatgtttgctttcagtggaatggcggagttgttataagagaaaaagtt
aattttggagaatttcctataatgttaaggtcaaaacgttgttacttgcaaggtgctaat
cccgagaaactggttgcttgcaaagaagaggcacgagaaatgggtggctatttcattctc
aatgggcttgagagagttgttcgggctttgatattgccgaaacggaattatcctatgagc
ttggaacggaattcatttcgcgaacgtcgggagggttatactgagaaagcagttgtaata
aggtgtgtgagagatgacctgtcttctgtaacagttaagttatattatcttcgtaatggg
agtgcaagacttggattctggatacaggggaaggaatacatgcttcctgttggcattgta
cttaaggctctgattgacactaatgatcacgaaatttatacaaaattgacatgctgctat
aatgagaaagatggtgacataaagggggctgttggctcgcaacttgttggtgaaagagcc
aagattattcttgatgaagttcggcacttggcgctttttactaaggaccagtgtctactg
catattggggaacacttccaacctgtgatggaggggatggaaactgagagttattcttct
gttgctgatgcagtgctgaggaatcacatatttgttcacttgaatgacaacaatgacaag
tttaatctgcttatctttatggtgcagaaacttttctcgcttgtagatcaaacttctgcg
cctgataactcagattctttgcaaaatcaggaaattttactgcctggccatctaattaca
atttaccttaaggagaaactggaagattggttacgcaaaggaaaaaagcttgttgaagat
aagattaataacaatggccaaaattttgatttctgcagcttaaaagatgtcaagaaggtg
atggacaaaaattcttcgaagcaaattggtacagcaattgagaatttgttgaaaactgga
agattgataacacaaacaggtttagatttacagcagagggctggtttcacagttcaggca
gagaggcttaactacctacgatttatttcgttttttcggtctgttcatcgtggggcttca
tttgctggacttcgaacaaccagtgttcggaagttgctacctgaatcttggggatttctt
tgcccagtgcacactcctgatggagagccttgcgggttactgaatcacatgacatgtact
tgccgaattacatcgtactacaactcacaaggaaatattagagatttttttaaaataaga
atgtctatacttgatgtcctagttggggttggaatgacaacttcatggccaaaacttgat
catgctgggcctcctcgagctcttcccgttcttctagatggttgtgttattggctcttta
tcctctggtgaagctgacaaagttgttgctcatttgcggagattgaaagtgtcagctgct
tcagtgattcctgatgacttggaagtgggatatgttcctctaagcttgggtggcacatat
cctggattgtacctgttcacttctccttctagatttattcggccagtcaaaaatatttct
atcccttcttcggatgggaaggatattgaacatattgggccctttgaacaggttttcatg
gaaataaaatgtccagatggtgggaatggaggaagaagtactacttttcctgcaactcat
gaagaacttatgccaactgcaatgcttagtgtggttgctaatcttacaccttggtcagac
cataatcaaagtccacgtaacatgtaccagtgccagatggcaaaacaaacaatggctttt
tctttgcaagcacttcattcacgcgcggatcaaaagctgtaccatcttcagactcctcaa
acaccaattgtgcgcacaaaaacatatacaaaatatggcttggatgattatccttcagga
actaatgcaatagtagcagtgcttgcatatacaggatatgatatggaagatgcgatgatt
ttgaataagtctgctgtggaacgtgggatgtgtcgtggacagatataccagacggaaact
attgacttgtgtgacggtaagagcaatcaagggcagagaatttttaaaagagaacattca
gataaggcaatatcttcttttgttgattccgatggacttccgtatgttggccaggtcata
catggaaacgaaccatactgtagtaccattaatcaggtgacaaattcaaagagagtctac
aaccacaagggttcagaaatgactattgttgactatgttgcggttgatacaaaaaataaa
cagcaacttcagaaggttaatattcgttttcgacatccaagaaaccctatcattggtgat
aaatttagcagcagacatgggcagaaaggtgtctgctctcagttgtggccagatattgat
atgccattctcaggggttacaggaatgcgccctgatctcataatcaatcctcatgcattt
ccttcaagaatgacgatagccatgcttttggaatctgttgctgctaagggaggaagctta
catgggaaatttgtggatgcaacaccgttttctgatgcagtcaagggagctaatggaaag
acagagacagagtccgagtctcttgttgatgagcttggttccatgttaagagctcgtggg
tttaattaccatggagttgaggtgttatacagtggtgtttatggaacagaactaacatgt
gagatatttattggccctgtgtattatcagcgtcttagacacatggtttctgacaagtat
caggtccgtgccactggacaagttgatcagatcactcgacagccaattaaaggaagaaag
cgtggtggaggtatacgtttcggagagatggaacgagactctatgcttgctcatggggct
gcatatttattacatgataggcttcatacgtgttctgattatcacattgctgatgtctgc
tctctgtgtggaagcatccttaccaccgcaattatccagccacaaaagcgggttgttaga
gaggttggcgggttgcctcctgctagggctccgaagaaggttatgtgtcatgcttgccaa
acaagcaaagggatggagacggtcgcaatgccttacgtttttagatatctggctgctgag
ttggcggctatgaacataaaaatgacaatacaactaagtagtgaagctggagcttga
DBGET
integrated database retrieval system
