Gossypium hirsutum (upland cotton): 121210865
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Entry
121210865 CDS
T04793
Name
(RefSeq) nijmegen breakage syndrome 1 protein-like
KO
K10867
nibrin
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121210865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
121210865
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121210865
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
121210865
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
121210865
BRCA1-C complex
121210865
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
Yop-YscD_cpl
PTCB-BRCT
Nbs1_C
Motif
Other DBs
NCBI-GeneID:
121210865
NCBI-ProteinID:
XP_040938635
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All DBs
Position
A12:10911077..10925042
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AA seq
536 aa
AA seq
DB search
MVWALLPVDPSSAEQEEEEEEEEDKYYIFKNGTYSVGRKGCDIIIHKDKGVSRIHAHIMV
DEMTQSCQVRIRDLSKYGTFINKNLSSNKKVHHFPNKQTSLEDGDLLSFGTGNATFRFSY
VPLVLYICCAEASQMNHHLQDKVSSIGARLTHVYSEDCTHVIVDQHVPLKRDLLDAIVAK
KPLLRTSWLELVAERSIQTKFPDCCSHVPTIMVDGAFVEVSDPKMRENCLGGYTFLLEST
HVYKFGDRLQSLLEVSGSRVNYVEEICSSSQAFGCGENTCLTYVIPGRSVDKFDHLDKLG
LSYRVDEMALIRAILCGKLDQSILISSSVPVSSSCSTDETVVADSDEEIEMATSVNVNAT
TCKEGAQNYVSRDGISMEAPSYVSKAEVSTYQDAIRLKDDQVTSKDDNCCMTARRDKADE
SEYGSSNIVYSQVLIVRDVNITSKNSFKEDNGVINYKRFRKASIQSGNSFNNLVPFSKYP
YKDYEFGSGDLAESVEEEKKRKKMDAIADDMFNSEKGGRQRGLSGSLRRGLLHTRG
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggtttgggctttgcttcccgtcgatccctcctcagctgaacaagaagaagaagaagaa
gaagaagaagataagtactatattttcaagaatggaacgtattctgtcggccgaaaaggg
tgtgatatcatcattcacaaagacaagggagtgtccagaatccatgctcatataatggtt
gatgaaatgactcaatcatgtcaagttcgaatcagagatttgtcaaagtacgggacattc
attaacaagaatcttagttctaacaagaaagttcatcattttcctaataaacagacctca
ttagaagatggggacctcctttcttttggaacaggaaatgcaacctttcgattctcttat
gtgccgcttgtactctatatctgctgtgctgaggcctcccagatgaatcatcatcttcag
gacaaagtttcatccattggtgctcgtcttactcatgtttacagtgaggattgtacacat
gtgattgttgatcaacatgtgcccctgaaaagggatctacttgatgcaattgtggctaag
aaaccgctcttacgtactagttggcttgagcttgtagctgagagaagtatccagactaag
tttcctgattgctgttcccatgttccaacaattatggtggatggagcatttgttgaagtt
tcagacccaaaaatgcgtgaaaactgtttgggaggatacacctttctcttagaatctaca
catgtgtacaagtttggggatagattgcagtctctgctggaagtgagtggctcgagggtt
aactatgttgaagaaatttgttcaagtagtcaggcctttgggtgtggagaaaatacttgt
cttacatatgtcatccctggaagatcagtggacaagtttgatcacttggataaactcggt
ttatcatatagagtggatgagatggcattaatacgtgctattttatgtggaaaattggat
cagtctatattgatatcatcatcagtacctgtttcttcttcttgctccacagacgaaact
gtagtagcagattccgatgaggaaattgaaatggctacatcagttaatgtgaatgctact
acatgtaaagaaggggcccagaattatgtgagcagagatggaatttccatggaagcacct
agctatgtgagcaaagcggaagtgtctacatatcaggatgctattagattgaaggatgac
caagtgacctctaaagatgataattgttgtatgacagcaagaagagacaaggctgacgag
tctgaatatggaagttctaatattgtttatagccaagttttaatagtcagagatgtaaat
ataacttccaaaaatagctttaaagaagacaacggtgttataaattacaagcgctttcgc
aaggcaagcattcagtctggaaatagcttcaacaatcttgttccattttcaaagtatcct
tacaaagattatgaatttggaagtggggacttggccgaatctgttgaggaggagaaaaag
agaaaaaaaatggatgccattgcagatgacatgtttaacagtgaaaagggggggagacag
cgtggtttatcaggttctcttcgtcgtggacttcttcatacacgtggttga
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