Gossypium hirsutum (upland cotton): 121210912
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Entry
121210912 CDS
T04793
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121210912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
121210912
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
121210912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
121210912
NCBI-ProteinID:
XP_040938789
LinkDB
All DBs
Position
A12:complement(83102558..83109531)
Genome browser
AA seq
765 aa
AA seq
DB search
MDTYSSGEELVIKTRKPYTITKQRERWSEEEHNRFLEALKLYGRAWQRIEEYIGTKTAVQ
IRSHAQKFFSKVIWCLLVYAYAYVQCYRQSPANYVKVRYMLEKEALAKGVPIGQALDIEI
PPPRPKRKPSNPYPRKTGAATTVQEGAKDGKSEMPLSSLRCKQMLDLEKEPLPERPTGDE
KATNLKENQDQSCSEVFTLLHEQNCSSASSMNKNFIPMSTALKSSCTFREFVPLPKETFH
DNGTSKASNLEKSCTSYEKSAQGQRKDDLDGDFCADEMQAAQNYPRHVAVHVLDGSLRTC
VQNPSLGMSFQDSVFHPTGDVHGPNLFANPAASATTEHKNNAPKSTHQALPPFHTPFIHL
RPDQEEYRSFLHVSSTFSNLIVSTLLQNPAAHAAASFAATFWPYANIESSGDSPANELRG
FPSTQMNSAPSMAAIAAATVAAATAWWTAHGLLPICAPLHTGFSCAPASTAAVPPMENGQ
IPAANMEQKDKTDLALTTQDERLYPEYSEALPGQHSASKSPTSSSSDCEERVDAKANTEV
KATDDEKAAEVIEPQDADKMKNRKQVDRSSCGSNSSSEVETDMLEKLEKDKEDSKGADPN
HPQVECNRRSRSSSNLSDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDGKNKGQQKENV
GTDKQNPVEKDGETTTLDLNRKMLDSRSDRQEVEKNALSKDEKNNAEDGLLRIGLGHAKL
KASRTGFKPYKRCSVEAKENRVMNTGSQGEERGPKRVRLEGEAST
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggacacatactcctctggtgaagaactagttattaagactaggaagccttatactatt
acgaaacaacgtgaaagatggagcgaggaagagcataataggtttctagaggccttgaag
ctctatggacgagcttggcaacgcattgaagaatatataggaacaaagacagctgtgcag
atcaggagtcatgctcaaaagttcttttcaaaggtcatttggtgccttcttgtttatgct
tatgcctatgttcaatgttatcggcagtcacctgccaattatgttaaagttaggtacatg
ttggagaaggaggcacttgctaaaggtgtaccaataggtcaagctcttgacatagagatt
ccacctccacgccctaaaagaaaaccaagcaatccttatcctcgaaaaactggtgctgct
actacagtacaagagggagctaaggatggaaaatctgaaatgccattatcttctttgcgt
tgcaagcaaatgttggacttggagaaagaaccacttccggagagacctactggagatgaa
aaggctacaaacctgaaagaaaatcaagaccagagttgctctgaggtttttacccttctc
cacgaacaaaactgctcctctgcgtcttccatgaataagaattttattccaatgtcaact
gcactcaaaagctcttgtacattcagggagtttgtacctttgccaaaagagacatttcat
gataatggtacaagtaaggcttcaaacttggagaagtcttgcacttcatatgagaaatca
gctcaaggccagagaaaagatgatttggatggtgatttttgtgcagatgagatgcaagct
gctcaaaattatcctcggcatgttgctgtgcatgtcctagatggaagccttagaacatgt
gttcaaaatccttccctgggtatgtcatttcaagattctgtatttcaccctacgggcgat
gttcatggacctaacctgtttgcaaatccagctgcatcagcaactactgaacataagaat
aatgcaccaaaatctactcatcaggcattgccaccttttcatactccctttatacatctt
cggcccgatcaagaggagtatcgatcctttctacatgtcagctccactttttccaatctc
attgtatctactttgttacagaatccagctgctcatgctgcagcaagttttgcagctaca
ttttggccatatgcaaacattgaaagttctggcgattctcctgcaaatgaactaagaggt
ttcccatctacacaaatgaactctgctcctagtatggccgcaattgctgctgcaacagta
gcagctgccactgcatggtggaccgcccatggactgcttcctatatgtgctcctctgcac
acaggcttttcctgtgctcctgcatccactgctgcagttccaccaatggagaatggtcaa
attccagctgcaaatatggaacaaaaagataaaactgatctagccctaactactcaggat
gaacgactataccccgaatactctgaagctttgccaggtcagcattcagcatctaaatca
cctacttcatcatcatcagactgtgaagagagagtagatgcaaaagcgaatactgaagtg
aaagctactgatgatgagaaggctgctgaagtaattgagcctcaggatgcagataaaatg
aagaacagaaaacaagttgaccggtcctcatgtggttccaattcaagtagtgaggtagag
acagacatgttagaaaaacttgaaaaagacaaggaagattcaaaaggagctgatccaaat
catccacaagttgaatgtaaccgtcgtagtagaagcagcagtaaccttagtgattcttgg
aaggaggtatctgaagagggacgactggcttttcaagccctcttctccagagaggtactt
ccacaaagcttctctcctccacatgatgggaagaacaaggggcagcaaaaggaaaatgta
ggtacagacaagcaaaatccagtcgagaaagacggagagacaacaacattagaccttaat
agaaagatgttagattctcgttctgaccgtcaagaagtagagaaaaatgcactatcaaaa
gatgagaagaacaatgcagaagacggcctgctgaggattggactaggacatgcaaaactt
aaggccagccgaactggatttaaaccttacaaaaggtgttctgtggaagccaaggaaaat
agagtgatgaacaccggcagtcaaggtgaagagagaggtcccaagagggtacgattagaa
ggggaagcttcgacttga
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