Gossypium hirsutum (upland cotton): 121212217
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Entry
121212217 CDS
T04793
Name
(RefSeq) probable E3 ubiquitin ligase SUD1 isoform X1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121212217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
121212217
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121212217
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
121212217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
121212217
NCBI-ProteinID:
XP_040940533
UniProt:
A0ABM2ZD39
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Position
A13:5447604..5454355
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AA seq
1124 aa
AA seq
DB search
MEIAPAVPPSHPLGGENPVSSTDDVLADSGKPSPSTSTSSSLSEKDEKATSSTASTVSLG
AVASRYDPDMEEEEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQ
CEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFIT
FWIWRLAFVRSFGEAQRLFLSHISTTIILTDCLHGFLLSASIVFIFLGATSLRDYFRHLR
ELGGQDADREDEADRNGARAARRPAGQANRNFAGDANGEDAGGAQGAGGAGQLIRRNAEN
VAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMI
FLGVVIFVPFSLGRIILHYVSWLFSSASGPVLSAVMPMTDTTLSLANITLKNALTAVTNL
TSEGQDNSMLGQAAEILKANSSAVGEVSSNTSAPFSADLLKGATIGASRLSDVTTLAIGY
TFIFSLVFFYLGIATLIRYTRGEPLTMGRFYGIASIVETIPSLFRQFLAAMRHLMTMIKV
AFLLVIELGVFPLMCGWWLDICTIRMFGKSMSQRVQFFSVSPLASSLIHWVVGIVYMLQI
SIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVNKHARRVLLSVAVYGSLIVMLV
FLPVKFAMKMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRSTIKSLLRYWF
TAVGWALGLTEFLLPKPDENGGQENANVEPGQPDRPQIVQLGGQEQAMVAFAADDDPNRG
LLASGNSNVVEEFDGDERADSDRYGFVLRIVLLLVVAWMTLLIFNSALIIVPISLGRALF
NAIPLLPITHGIKCNDLYAFVIGSYVIWTAIAGARYSIEHIRTKRAAVLFGQISKWSAIV
VKSSMLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLV
MLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLARGVF
PVLGYPLVVNSAVYRFAWLGCLCFSCLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFG
ENSEEKQNVAGSSSETQISDLRDTGIIQHDREVDVGLRLRRAVN
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcccccgcggttccgccatctcatcccctgggcggtgaaaaccccgtttct
tctacagacgacgttttagcagacagcggaaagccttcgccatcaacatcaacatcgtca
tcgttgtcagagaaggatgaaaaagcgacgtcatctacggcgtcaacggtgtcgttgggg
gcggtggcttcgagatatgatccggatatggaggaagaagaggaagatgtttgcaggatc
tgccggaacccgggagatgctgacaatccgcttaggtacccctgcgcatgtagcggcagc
atcaaatttgtccatcaagattgccttcttcagtggcttaatcacagcaatgctcgccaa
tgcgaggtatgcaagcatgcgttttctttctcccctgtgtatgcagagaatgctccagca
aggcttccttttcaggagtttgttgttgggatggcgatgaaagcctgtcatgttctacag
ttcttcttgcgtcttagttttgtgctttcagtttggctcctaattattcctttcattacc
ttttggatatggcgcttggcattcgtcaggagttttggtgaagctcagagattattctta
agccatatttcaaccacaatcattcttactgattgtttgcatgggttcctactatctgct
agcattgtgtttatttttcttggagcaacttctttaagggattacttccggcatttacga
gagcttggaggacaagatgctgatagagaagatgaagcggataggaatggtgctcgtgct
gctaggcgacctgctggacaagctaataggaattttgccggtgatgctaatggtgaagat
gctggtggagcacaaggtgctggtggagctggtcaattgatcagaaggaatgctgaaaat
gtggctgctcgttgggaaatgcaggcagctcgtcttgaagctcatgtggaacagatgttt
gatggcctggatgatgctgacggtgcggaggatgtaccttttgatgagcttgttggcatg
cagggtcctgtttttcatttggttgagaatgctttcactgttctagccagcaatatgata
ttccttggcgttgtaatttttgtgcccttttctcttggccgcattattctccattatgta
tcttggcttttctcttctgcaagtggtcctgttctgtcagcagtcatgccaatgacagac
actaccctttccttagcaaatatcacattgaagaatgcattaactgcagttacgaatttg
acatctgaaggccaagacaatagcatgcttggtcaggctgcagaaatcttaaaagcaaac
tctagtgcagtaggtgaagtttcaagcaacacaagtgcaccattttcagcagatctcttg
aaaggagcaactattggagcatcaaggctgtctgatgttacaactcttgctattggatat
acatttatattctctttagtcttcttctacctgggcattgccactttgattaggtacact
aggggtgagcctttgacaatggggaggttctatggaattgcttcaattgtcgagacaatt
ccatccctcttcaggcagttcttggctgcaatgaggcatttgatgacaatgattaaagtt
gccttccttcttgtaattgagcttggggtgtttcctttgatgtgtggatggtggctagat
atatgcaccataaggatgtttgggaaatcaatgtctcaaagagttcagttcttctcagtc
tcacctttagctagctcattgattcattgggttgtaggaattgtatatatgctacaaata
agcatctttgtcagccttcttcgaggggttttacgcaatggtgttctgtacttccttcga
gacccagctgatccgaactacaatcccttccgtgatttaattgatgatcctgtaaacaag
catgctcggagggtcttgttatcagttgcagtttatggaagtttgattgtgatgctggta
tttttgccagtcaagtttgctatgaagatggcaccatctatcttcccacttgatatatcg
gtatctgatccatttactgagattccagctgacatgcttctctttcaaatatgcattcca
tttgccattgagcattttaaattgcggtcaacaatcaagtctcttctccgctactggttt
actgcagttggctgggcattaggcttaacagagtttttacttcccaaacctgatgagaat
ggtggccaggaaaatgccaatgtagaaccaggtcagccagatagaccacaaattgtgcaa
ctaggtggacaggaacaggccatggttgcatttgctgctgatgatgatccaaatagaggg
ctccttgcatcagggaattctaatgtcgtggaggagtttgatggggatgaacgagctgat
tcagacaggtatggcttcgttcttcgcattgttctcttgctggtggtcgcctggatgact
ttgcttatatttaactctgccctaataatagttcctatatcacttgggcgtgctcttttc
aatgccattcctcttctcccaataactcatggcattaagtgcaacgacctctatgctttc
gtcattggaagctatgtcatttggacagctattgctggggctagatactccattgagcac
attagaacaaagagggcggcagttctatttggccaaatttccaagtggagtgccattgtt
gttaagagttccatgctgttatcaatatggatttttgtcattcctgtacttattggtctg
ctttttgagcttttggtgattgtgccaatgcgggtgcctgtagatgagagcccagttttc
ctactctatcaggattgggcattgggtctcattttccttaagatctggactagactggtt
atgctggatcatatgatgccattggtagatgaaagctggcgagtaaaatttgaaagggta
agagaagatggtttttctagattgcagggcctttgggtattgcgggagattgtatttccc
atcataatgaagctgctgacagccctgtgtgtaccttacgtattagcccgaggggtgttt
ccggtgcttggctacccattagtggtcaattcggctgtctaccgcttcgcatggctaggc
tgcctttgcttcagctgcttgtgcttttgtgcaaagagattccatgtctggttcacgaac
ctccacaattctatcagagatgaccggtatcttattggtcgtcgacttcataactttggg
gaaaactcggaagagaagcaaaatgtggcagggtcttcctcagaaacacagatttctgat
ctgcgggacactggaataatccagcatgaccgagaggttgatgtggggctgagactaagg
cgtgcagttaattaa
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