Gossypium hirsutum (upland cotton): 121212515
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Entry
121212515 CDS
T04793
Name
(RefSeq) transducin beta-like protein 3 isoform X1
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121212515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
121212515
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121212515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
Utp13
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
PEP5_VPS11_N
WD_LRWD1
Beta-prop_WDR19_1st
Ge1_WD40
WD40_like
WDR54
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_IP5PC_F
Cytochrom_D1
Beta-prop_NOL10_N
Beta-prop_LRRK2
Mcl1_mid
Beta-prop_IFT140_2nd
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
121212515
NCBI-ProteinID:
XP_040941357
LinkDB
All DBs
Position
A13:complement(100298716..100307391)
Genome browser
AA seq
888 aa
AA seq
DB search
MASATLKKNYRCSQSLQQFYSGGPFVVSSDGSFIACSCGESIKIVDSSNASTKFTIEAES
STITALALSPNDKLLFSAGHSRQIKVWDLDTFKCLRSWKGHDGPVMGMACHGSGGLLATS
GADRKVLVWDVDGGFCTHYFKGHKGVVTSIMFHPDVNKSLLFSGSDDTTVRVWDLLAKKC
VAVLEKHFSAVSSMAVSEDGWTLLTAGRDKVVNLWDLLDYRCKSTIPTYEVLEAVCVVYS
GSRFASSLGAFLQQSGKKKSRSTGIYFIAAGERGIVRIWTSEGAVFLYEQKSSDVTISSA
EDEDSTRGFISAVMLPLDQGLLCVTADQQFLFYSPAEHLEEKWSLKLTKRLVGFNDEIVD
MKFLDEEEQYLAVATNLEQVRVYDLSSMSCSYVLAGHTDTILCLDTSISSNGRRLILTGS
KDNSVRLWESERRCCIGLGIGHMGAVGAVAFSKKCRDFFVSGSSDRTIKVWNFHGLSDDI
EEPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACIWRLPELVLVVKFTGHKRG
IWCVEFSPVDQCVITASGDKTVKIWAIADGSCLKTFEGHTSSVLRASFLTRGTQFVSCGA
DGLVKLWTIKTNECIATYDQHEDKVWALAVGKKTEMLATGGSDAVINLWHDSTAAEKEEA
FRKEEEGVLRGQELENALLDAEYTKAIQIALELRRPHKLFELFSELCRKREAGYHIDKAL
HALGKGEFLLLFEYIREWNTKPKLCNVAQSVLFRAFNILLPTEIIEIKSISELLEGLIPY
SQRHFSRIDRLIRSTFLLDYTLLRMSVIEPATQDDLKTKSLLHSEKNEEDALLTDNAEED
QKQVSEEQKPKASGKKRKSHKSGDHSRSHKKVKDSSTHANTAAVPSQA
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagcaacattaaaaaagaactatcgctgctctcagtcgctgcaacagttttat
agtggcggcccatttgtggtctcatcagatggctctttcattgcttgttcgtgcggtgaa
tccataaagattgtggattcatcaaatgcctccacgaaatttaccatcgaggctgagtcc
agtaccatcacggcattggctttaagtcccaatgataagttgttattctctgctggacat
agtaggcaaattaaggtctgggacttggatactttcaaatgcctgcgctcttggaagggg
catgatggtccagtaatgggtatggcttgccatggctctggtggactgcttgcaacttca
ggagctgataggaaagttcttgtttgggatgttgatggtggtttctgcactcattacttt
aaaggtcataaaggtgttgtgactagtatcatgtttcatcctgatgtaaataaaagcctt
cttttctctggaagcgatgacactactgtacgggtctgggatcttctagcgaaaaagtgt
gttgcagtgctagaaaaacatttctcagcagtttcttctatggctgtgtcagaagatgga
tggacgttgctaactgcaggaagagataaggttgtaaatttatgggaccttcttgactat
agatgcaagagtacaatacctacttatgaggtgcttgaagctgtttgtgtagtttattct
gggagtcggtttgcctcgtctctgggtgcattcctccagcaaagtggaaagaagaaaagc
agatcgaccggaatttattttatcgcagctggtgaacgtggaattgtacgcatctggacc
tctgaaggtgcagttttcttgtatgagcaaaagtcctcagatgttactattagctcagcc
gaggatgaagattcaacaaggggtttcattagtgctgttatgctgcccttggatcaagga
ttgctttgtgtgacagctgatcagcagtttctcttttattctccagcggagcatctagaa
gaaaagtggtctttaaaattgaccaaaaggcttgtgggtttcaacgatgagattgtggat
atgaagtttcttgatgaagaggaacaatatctagctgttgctacaaatcttgaacaggtt
cgagtgtatgacctttcctccatgtcatgttcctatgttttggctggtcatactgatact
attctatgccttgatacatctatatcaagtaatggaagaagacttattctaactgggagt
aaggacaatagtgtaaggttgtgggaatcagaacgaaggtgttgcataggacttggcata
ggtcacatgggagcggttggagctgttgctttttccaagaagtgccgagatttttttgtc
agtggcagtagtgatcgtaccattaaggtttggaactttcatggactctctgatgatatt
gaagagcctattagtttaaaagcaaaggcagttgtagcagcgcatgataaagatataaat
tctctggctgttgcaccaaatgacagtttagtgtgtagtggttcacaggatcgtactgct
tgtatttggaggcttccagaactggtacttgtggttaagtttacagggcataaacgaggg
atctggtgtgtagagttttcacctgttgatcaatgtgtaataacagcatcaggtgacaag
actgtaaagatatgggctatagctgatggttcgtgcctgaaaacatttgaagggcataca
tcaagtgtattaagagcatcatttcttacacgtgggacccagtttgtatcatgtggtgct
gatgggttggttaagctgtggacaatcaaaacaaatgaatgcatcgctacctatgatcag
catgaggacaaggtttgggcattggccgttgggaaaaagacagaaatgttagcaacaggt
ggcagtgatgcagtgatcaatctgtggcatgattcaactgctgctgagaaagaggaagct
tttcgtaaagaggaagaaggggttttgagagggcaagaattagaaaatgcactgttagat
gctgagtacacaaaggcaatacaaattgctttggagcttaggaggcctcataaacttttt
gagctgttttctgagctttgcaggaagagagaagctgggtaccatatagacaaagccctt
catgcccttggcaagggagaatttcttctactttttgagtatatacgagagtggaacaca
aagccaaagctgtgtaatgttgcccaatctgttcttttccgagctttcaacattcttctt
ccgacagagattatcgagataaaaagcattagtgaactacttgaaggtcttatcccatat
tctcagagacatttcagcaggatagacaggcttataaggagcacatttctgttggactac
actcttcttcgaatgtccgttattgaacccgcgactcaggatgatttgaagaccaaatct
ttattacattccgagaaaaatgaggaagatgcacttttaacagataatgcagaagaagat
caaaagcaagtttccgaagagcagaaaccaaaggcctctgggaaaaagaggaaatctcac
aaatctggagaccattcacgctcacataagaaggtcaaggacagctcaactcatgcaaat
actgcagctgtgccatcgcaggcatga
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