Gossypium hirsutum (upland cotton): 121212533
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Entry
121212533 CDS
T04793
Name
(RefSeq) replication factor C subunit 3-like isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03410
Base excision repair
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121212533
03410 Base excision repair
121212533
03420 Nucleotide excision repair
121212533
03430 Mismatch repair
121212533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
121212533
03036 Chromosome and associated proteins [BR:
ghi03036
]
121212533
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121212533
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121212533
DNA Replication Termination Factors
ELG1-RFC complex
121212533
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121212533
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121212533
Check point factors
HRAD17(Rad24)-RFC complex
121212533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
DNA_pol3_delta2
RCF1-5-like_lid
AAA
Rad17
Sigma54_activ_2
AAA_22
Mg_chelatase
AAA_23
ABC_tran
AAA_5
DUF815
RuvB_N
AAA_29
AAA_2
RsgA_GTPase
AAA_16
AAA_24
nSTAND3
TPGS1_C
Motif
Other DBs
NCBI-GeneID:
121212533
NCBI-ProteinID:
XP_040941417
LinkDB
All DBs
Position
A13:101831055..101840347
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKYRPKTLDQAMVHQEIALNLKKLVAEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
PSAEKVKVENKNWKIDAGSRTIDLELTMLSSANHVELSPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLILNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNIRINAPSEEQIIKVIEFIGKKEGLQLPSGFAARIAEKSNRSLRRAILSFETCRVQQH
PFTSNQAILPMDWEEYISEIATDIMKEQSPKRLFEVRGKVYELLINCIPPEIILKRLLHE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgggttgataaataccgacccaaaaccctagaccaagctatggttcatcaagag
attgccctgaatctcaagaaactggttgcagagcaggattgccctcacttactcttctat
ggaccatctgggtctggcaagaaaaccctaattatggctcttcttagacaaatttttggt
ccctctgctgaaaaggtgaaagtggagaataagaactggaaaattgatgctggaagtaga
acaattgatctggagttgaccatgttgtcaagtgccaaccatgtggaattgagtccaagt
gatgcaggctttcaggacagatacatagttcaagagataattaaggaaatggctaaaaat
agaccaattgacaccaaagggaaaaaaggatataaagtgctgattctaaatgaagttgac
aagctttcaagagaagcccagcattcactccgaagaacaatggagaagtacagtgcttct
tgccgtctaattttgtgctgtaatagttcttcaaaagtcactgaagccattcggtctcgt
tgtttgaacattcgaataaatgctccttcagaagaacagatcattaaggtgatagagttc
attggaaagaaagaagggttgcaacttccatctggttttgcggcccgcattgcagaaaag
tcaaataggagtttaaggagagctatattgtcatttgagacttgccgtgttcaacagcac
cctttcacaagcaaccaagcaattctgccaatggattgggaggaatatatatctgaaata
gcaactgatataatgaaggagcaaagccctaaaaggctgtttgaggttcgagggaaggtg
tatgaattgcttataaattgtattccacctgagattatcctgaagaggctccttcatgag
ttattgaagaaattggatgcagagctaaaacacgaggtgtgccattgggctgcgtattat
gagcataggatgcgtcttggacagaaagccatctttcatattgaagcatttgttgccaag
ttcatgagcatttacaaggccttcctgattgcaacatttggctga
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