Gossypium hirsutum (upland cotton): 121212589
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Entry
121212589 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121212589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121212589
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121212589
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_12
ARM_TT21
TPR_MalT
TPR_10
TPR_15
DUF627
ANAPC3
Motif
Other DBs
NCBI-GeneID:
121212589
NCBI-ProteinID:
XP_040941611
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All DBs
Position
A13:107819112..107825925
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AA seq
857 aa
AA seq
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MDSRDSSSSLVPNRDGTAGDDDGVLSVTAALAKDAALYFQSRKLAECVDVLTELKTKKEG
DPKVLHNIAIAEFLRDGCSDPKKMLEVLNNIKKRSEELAHASEEQVESGSDVGNKVTSGS
KESSSTTRQVSASHSASTIYTAEFDTSVISLNIAVIWFHLHEYAKALSVLEPLYKNIEPV
DETTALHICLLLLDVLLASCDASKSADVFNYLEKAFGVGNVSQGDNGNILLQQSTNLVGK
LSSVPSSSLVSDVSTPELAASVKASENPLSRTLSEDPLDEMFSTLDIAGQNLSRSADLTS
PKELPRTTVDRSIFGVDLKLKLQLYKVRFLLLTRNIKLAKREVKHATNIARGRESSTALL
LKAQLEYARGNHRKAIKLLMASTNMTDAAISSMFNNNLGCIFYKLGKYHTSAVFFSKALS
NCSSLQKKKPLKLFTFSQDKSLHITYNCGLQYLACGKPIIAARCFQKASLIFYKRPLLWL
RLAECCLMAVEKGLVEGSRPPSNRSEIRVDVIGKGRWRKLLIDDGISRSRLVDSVGKDDW
TLGGDQEPKLSLPLARQCLYNALHLLNCSDSSHLKSLLPSNSSLEENESCDGASSKNPNH
KSLVGIDSKPSTLSIGLVNSNGDLKEPKTGTNQEMIHNSVAYFADICRKENQMMKQALLA
NLAYIELELENPLKALSAARSLLELPGCSRIYIFLGHVYAAEALCLLNKPKEAAEHLSIY
LSGPNKVESPFSQEDCEQWLVEKPIDCEEPNGGGAAATAAKNPSPEGTQEFMFLKPEEAC
GTLYANLAALYATQGELDRAHQFTTQALSLLPNSTEATMTAIYIDLVLGKSQEALSKLKH
CSHVRFLSSNLQSNKSS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcgagattcatcatcgtcgttggttccgaatcgagatggcactgcaggcgat
gatgacggagtcctttccgtcactgctgcactcgctaaagatgctgctctttacttccag
tctagaaagctcgccgagtgtgttgatgtcttgactgagcttaagacgaagaaagaaggt
gatcccaaggttcttcataatattgcaatagcagagtttcttcgggatggttgctctgat
ccaaagaagatgcttgaagtccttaacaatatcaagaagaggagtgaggagcttgctcat
gcatctgaggaacaggtggagtctggtagcgatgttggaaataaagttacttcaggttca
aaagaaagcagttcaactacacgtcaagtttctgcttcacatagtgccagtactatttat
actgctgaatttgatacctctgtcatttctctaaacatagcagttatttggttccacctt
catgaatatgcaaaggcattatcagttcttgaacctctatataaaaatattgaaccagta
gatgagacaacagctcttcatatctgcctcttgttgctggatgttttgctagctagctgc
gatgcttcaaaatctgcagatgtgttcaattatttggaaaaagcatttggtgttggcaat
gtgagccaaggggacaatggtaacattttattacaacaatccacgaatctagttggaaaa
ttatcctcagttccgagcagctcattggtctcagatgtttctactccggaattagctgct
agtgtgaaggcttccgagaatccactatccagaactctatcagaggacccactggatgaa
atgttttcaacactggatattgctggacagaacttatcacggtctgctgatcttacatct
ccaaaagaacttcctaggaccacagttgatagatctatctttggtgttgatttgaagctt
aagctgcaactttacaaggtccgatttctgcttctaactcgaaatataaagctagcaaag
cgtgaagtcaagcatgctacgaatattgctcgagggagagagtcgtctacagctctcctc
ttgaaagcccagcttgagtatgctcgtggaaaccacagaaaagccatcaagttgttgatg
gcatcaactaacatgacagatgcagcaatttcgagcatgtttaacaataatcttggctgc
attttctataaactcgggaagtatcatacgtccgcagtgttcttttccaaggccctcagt
aattgttcatctcttcagaagaagaaacctctaaagctatttacattctcacaggataaa
tctctccacataacatataattgcggattgcaatatttggcctgtgggaaaccaataatt
gccgcacgctgtttccagaaggcaagtttgattttctacaaaagacctctcttgtggctt
cggcttgctgaatgctgtctaatggctgtagagaaaggacttgtagaaggaagtcggcct
ccatcaaacagatcagaaattagggttgatgttattggaaagggtaggtggaggaaactt
ctgattgatgacggaatatcacgaagcagacttgtagattctgttggaaaggatgattgg
actttaggtggtgatcaggagcctaagctttccttaccccttgctcggcagtgtctctat
aatgcattgcacttgttgaattgttctgattcgagtcatttaaagtctcttctaccttcc
aattcatccttggaggaaaatgaatcttgtgatggggcgtcttccaagaacccaaaccat
aagagcttagttggcatagattccaaaccttcaactctgtcaataggtctggttaactcg
aatggggatttgaaagagccaaagacaggaactaatcaggagatgattcataattccgtt
gcctattttgcagatatttgcagaaaagaaaatcagatgatgaagcaagctcttctagct
aacctggcatacatagagttagaactggagaatccattgaaggctctttcagcggcacga
tctctcttagaactacctggttgttcgagaatctacatctttctaggtcatgtctatgca
gcagaggccctctgcttgcttaacaagcctaaggaagccgcggagcatttgtccatttat
ttgtccggcccaaataaggttgaatcaccattcagtcaagaagactgtgagcagtggcta
gtagaaaaacccatcgattgtgaagaaccaaacggaggaggagcagcagcaacagctgcc
aagaacccttcccctgagggcacgcaggaattcatgtttcttaagccagaagaagcatgt
ggaacactttacgcaaatcttgccgccttgtacgcaacacaaggcgaactagatcgtgcc
caccaattcacaacacaagcattatccctactacccaacagtactgaagccaccatgacc
gcaatttacatcgatcttgtgctcggtaagtcacaagaagctctatccaagttaaaacat
tgtagtcatgttaggttcctttcaagcaatctacagtcaaataaatcctcctaa
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