Gossypium hirsutum (upland cotton): 121212677
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Entry
121212677 CDS
T04793
Name
(RefSeq) protein DAMAGED DNA-BINDING 2-like
KO
K10140
DNA damage-binding protein 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121212677
09124 Replication and repair
03420 Nucleotide excision repair
121212677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
121212677
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121212677
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121212677
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121212677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EIPR1
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
WD_LRWD1
WD40_RFWD3
WD40_MABP1-WDR62_2nd
PQQ_3
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
121212677
NCBI-ProteinID:
XP_040941857
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All DBs
Position
A13:complement(110734207..110738466)
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AA seq
545 aa
AA seq
DB search
MAPQVRRTAFPKVLIERDTDSEQSSSDDDDEEEEQENENEEKTEEFNDTKKKGKSPITIS
LKKVCKVCKKTGHEAGFKGATYIDCPMKPCFLCKMPGHTTMACPHRVATEHGVVPAPHVN
TQNPVEFVFERQLKPRITPIKPAYVIPDQVDCAVIRYHSRRVTCLEFHPTNNHILLSGDK
KGQLGVWDFAKVHEKTVYGNIHSCILNNMRFSPANDGMIYAASSDGTVSCTDLETGISST
LMNLNPDGWQGPGSWRMLYGMDINLERGVVLVADNFGFLYLVDSRSNSQTGKAIMIHKKG
SKVVGLHCNPFQPDLLLSCGNDHFARLWDMRRLEAGSVLANLEHRRVVNSAYFSPFSGTK
ILTTSQDNRLRIWDSIFRDLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYI
SENYNGTALHPIDFIDINTGQLVAEVMDPNITTITPVNKLHPRDDVLASGSSRSLFIWRP
KEKFDVSEQSDARKIIVFGGDEKKRGKRSKDDYDDDSDDDKFNVKGKNVKVKKPVKQMTH
RKAKR
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcaagtaagaagaacggcgttccctaaggtacttattgagagagatacagac
tctgaacaaagctcatcagatgatgatgatgaggaagaagaacaagaaaatgaaaacgaa
gagaaaactgaggagtttaatgatacgaaaaagaaaggaaaatcacccattactattagc
ctcaagaaagtttgtaaagtgtgtaagaaaacgggacatgaagctgggtttaaaggagct
acctatattgattgcccaatgaagccttgttttctttgcaaaatgcctggtcatactaca
atggcatgtccacatagagttgctacagagcatggtgttgtccctgcaccccatgtaaat
actcagaaccccgtggaatttgtgttcgagcgacaacttaaacctagaattaccccgatc
aagccggcgtatgtgatcccggatcaagtcgattgtgctgttatccgataccacagtaga
agagtaacgtgtttggagtttcatcccactaacaatcacatccttttgtccggagataag
aaaggacaactcggagtttgggattttgcaaaagtgcatgaaaagacggtttatggaaac
atacactcttgcatactcaataatatgaggttcagtcccgcaaatgatggtatgatatat
gctgcatcttcggatggaactgtcagttgcacagacttagagaccgggatttcatcaact
ttaatgaatcttaatccagatggttggcagggtccggggagttggaggatgctttacgga
atggatatcaacttggagagaggtgttgtgcttgtggctgataactttggtttcctctac
ttggtcgatagtcgctccaacagccaaaccggtaaggcaataatgatccataagaaagga
agtaaagtcgtcggtctacactgtaatccttttcaaccagatcttttgctgagttgtgga
aacgatcactttgcccgtttgtgggatatgcgtcgattagaagctggatctgttcttgct
aatctcgagcatagacgtgttgtgaactccgcctatttctctccattttctgggactaaa
atccttaccacgtctcaagataatcgccttcgcatatgggattccatcttccgggatttg
gactcaccgagtcgggaaatcgtacatagtcatgatttcaatcggcatttgactcctttc
cgagctgaatgggatcctaaggatccctcagaatctctagccgttatcggtcgttacatc
agtgaaaattataacggaactgctctacaccctatcgatttcatagacataaacacgggg
caattagtagctgaggttatggacccgaacattactactatcactcccgtgaacaaacta
catccacgagacgatgttttggcatcgggtagttcaaggtctctttttatttggagaccg
aaggagaagtttgacgtttcggaacagtcagatgcgaggaaaatcatcgtctttggagga
gatgagaaaaagcggggcaagaggtcaaaagatgattacgatgatgattccgatgatgat
aaattcaacgtcaaaggcaaaaacgtaaaggtcaagaaacccgtaaagcaaatgactcat
cgaaaggcgaagcgctga
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integrated database retrieval system
