Gossypium hirsutum (upland cotton): 121212693
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Entry
121212693 CDS
T04793
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121212693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121212693
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121212693
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121212693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121212693
NCBI-ProteinID:
XP_040941893
LinkDB
All DBs
Position
A13:complement(111113065..111118451)
Genome browser
AA seq
664 aa
AA seq
DB search
MSGLLNSSVNGSASNIPDSSGRSFATSFSGQSGAASPGFHHTGTIQGLHGIHGSFNVPNM
PGTLTSRNSTLSNVPTGGVQQPTGNLSGGRFASNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPILGNSGPRITSSMGNMVG
GGNIGRSISSGGGLSVPGLASRLNLSANSGSGSLSMQGQNRLMSGVLPQGSPQVISMLGN
SYPSAGGPLSQSHVQAVNNLSSMGMLNDVNSTDNSPFDINNDFPQLTSRPSSAGGPQGQL
GSLRKQGPSPIVQQNQEFSIQNEDFPALPGFRGGNADYGMDLHQKDQLHDNTMLMMQSQH
FSMGRPAGFNLGGSYSSHRPQQQQQHVPSASSSGVSFSPVNNQDLLHLHGSDIFPSSHSS
YHSQTSGPPGIGLRPLNSSNSVSGMGYDQLIQQYQQHQNQSQLRLQQMSAVNQSFSEPGM
KPMQAAQSNHDPYGLLGLQSVLRMNDLDLTSLALGIDLTTLGLNLNSSENLYKTFGSPWS
DEPAKGDPEFTVPQCYYAKQPPPLHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELYNR
GWFYHKEHWCWFIRVPNVEPLVKTNTYERGSYHCFDPISFETVRKDNFVVHYEMLEKRPA
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggattacttaattcttctgtcaacggatcagcatcaaatattccagacagcagc
ggacgttctttcgctacatctttctctggtcagtctggtgcagcctcccctggtttccat
cacactggcactattcagggccttcatggtattcatggtagctttaatgttcccaacatg
cctggtactctcacatcaagaaactcgactttaagtaatgttccaactggtggggttcaa
caacctactgggaacctatctggtggaagattcgcctcaaataatctccctgttgctctt
tctcagttatctcatggcagttcccatgggcattcaggagtaaccaatagaggaggtatt
agtgttgtaggaaaccctggatttagtagtaacacaaatggagttggtggttctatacct
ggaattctcccaacatctgctgcgattggtaaccgcaatgctgttccaggattgggagta
tccccaattttgggaaattcaggtcctaggataactagttctatgggaaacatggttggt
gggggcaacattgggaggagcataagctcgggtggaggattatccgtgcctggtcttgct
tctcgcctgaacttaagtgccaatagtggatctggaagtttaagcatgcagggtcagaat
aggttgatgagtggtgtgcttcctcaaggatctcctcaggtaatttcaatgttgggcaat
tcttatccatctgctggtggtcccctttcccagagccatgttcaagctgtgaacaatctt
agctctatgggaatgttgaatgatgtgaactctactgacaattccccttttgacataaac
aatgatttccctcagttgacaagtcgtcctagttctgctggagggcctcagggacaattg
ggctcattacgaaaacaaggtcctagtcccattgtccaacaaaaccaagagttcagcatt
caaaatgaagatttccctgctttaccaggatttagaggtggtaatgctgactatggaatg
gatttgcaccagaaagatcaacttcatgacaataccatgttaatgatgcaatctcagcac
ttctctatggggaggcctgcaggatttaacttgggtggatcctattcttctcatcgcccg
cagcagcaacagcaacatgtgccatcagccagtagcagtggagtctccttttcacctgta
aacaaccaagatcttctccatttacatggctctgatattttcccatcttcacattcgagc
taccactcgcagaccagtggaccacctgggattgggctaaggcctctaaattcctcgaat
tcggtttctggtatgggttatgaccagctcatacagcaataccagcagcatcaaaaccag
tcccagctccgtctgcaacagatgtcagcagtcaatcaatcatttagtgaacctgggatg
aagccaatgcaggctgcgcagtctaatcatgacccctatggattacttgggttgcaaagc
gtgctaaggatgaatgatcttgatctgacttcccttgctctcggaattgatctgactaca
ctcgggttaaatttgaattcatcggaaaatctttacaagacatttggttctccatggtct
gatgaaccagctaagggtgacccggagttcactgtgccacaatgttattacgctaagcaa
ccacctcctttacaccaaggttatttttcaaagttcactgtggacacattgttctatata
ttttacagcatgccaaaagatgaagctcaattatacgctgcaaatgaactttacaataga
ggctggttttaccacaaggagcactggtgttggttcataagggttcccaatgtggagcca
ctagtgaagacgaacacgtacgagagaggttcttatcactgttttgatccgatatcattt
gaaacagtccgcaaggataatttcgttgttcattacgagatgttggaaaaaagaccagca
ttacctcaacattaa
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integrated database retrieval system
