Gossypium hirsutum (upland cotton): 121212718
Help
Entry
121212718 CDS
T04793
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121212718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121212718
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
121212718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
PilO
Dark_CARD
P116
Motif
Other DBs
NCBI-GeneID:
121212718
NCBI-ProteinID:
XP_040941992
LinkDB
All DBs
Position
A13:complement(81653331..81657454)
Genome browser
AA seq
966 aa
AA seq
DB search
MLNPSLPVASRTRSRMEAYWSEVCPPSKRRNTRKKVVVQDPSPIPTKNHSRETQFLYEAP
NIDIHRCEQDSRHPANISNLDYNEEEDDDDDEDEDNDDPMEGSHEALPSPSEEDNYESED
VDYCGEEEEKDVVYINDYTSSGTESKPKSKGKKVGAASTSSRKLHLLTVEADAILENVDS
DSNKVLEVESENNSLPIKFGSWVENTVTPNNADIVDDEMESLLTEMQFCLASDGIASKPS
LVEIEDAANVSEVKQDRAVLCRQGDHYLVLDEEIGIKCKFCSFLQLEIKYVASPFMKHPY
GKFGRQYSGIVDSSMFDGLQDVDPNIDMPGCDSSANVEGTVWEIIPNIKEKLYPHQREGF
EFIWNNIAGGIYRDKSKNSSSEGGGCIISHAPGTGKSLLTIVFLQTYLKENPSCRPVIVA
PCSMLLTWEAEFSKWKVDIPFHNMNSPDFCGMGKTNGVALYEKLKVGVPDADRLVRPLVK
LLSWKYDGGILVISYNLFTQLAGKETKRKQKCKNLHKQISKILLDLPGLLILDEGHIPRN
AATLLWKALSGIKTNRRIILSGTPFQNNFDELFNTLCLVRPTFAEGIRYSTRYKHNSRLG
CKGNEAKRNFTSWIGSIRNEIGGLREVRAVIKPFVHVYKGTILQTALPGLRHTLVVLRPT
ELQKKILERVEEILKHVQEILECVKEAKNLFKRRREKEKKNALDFDRYVSMISIHPSLLK
QLLKQLPDLKDINEVVSSIVSTEEIERIRLKPEEGVKTRFLMNLLKLSEALEERVIVFSQ
YLGPLRLIMEQLEYHFKWKEGEEILFMHGKCDIKQRQCSINVFNDPESKARVLLASIKAC
SEGINLIGGSRVVLLDMTWNPSVERQAICRAYRLGQKKVVYVYRLISSVIEGHKFNRQAG
KDRVSELLFSSDEHQEQVCDIVEDKVLEEMLQHGTIKSMFEKIINEPKDCEFIEAFEDQE
KVSVPS
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgttgaatccctccttgccggtggcttcaagaacccgaagtaggatggaagcctactgg
tccgaggtctgtcctccaagcaagcggaggaacaccaggaagaaggtggtggtgcaggac
cccagccccatacctactaagaatcactcccgtgaaacccaattcttgtacgaagcacct
aacattgacatacaccgctgtgaacaagattccagacaccctgctaatatttccaatctt
gattataatgaagaagaagatgatgatgatgacgaagacgaagacaatgatgatccaatg
gagggttctcatgaggctctcccctctccaagcgaagaagacaattatgaatccgaggat
gtggattactgtggggaagaagaggagaaggacgtcgtttatatcaacgattatacatct
tccggtaccgagtctaagcctaagtctaagggtaaaaaagtgggggcggcctcgacctcc
tccaggaaactccaccttcttacggtagaggcggatgctattttggagaatgtagactcg
gattcaaataaggtcctcgaagttgaatctgagaacaactctttgcctatcaagttcggt
tcttgggttgagaacacagttactcctaacaatgcagatattgttgatgatgaaatggag
tcactgttgactgagatgcagttttgtcttgcgtctgatgggattgcttcaaagccttcc
ttggtggaaattgaggatgccgctaatgtttctgaggttaaacaggacagagcagtccta
tgtcgtcaaggggatcattatcttgtgctagatgaagaaattggaataaaatgcaaattt
tgctcctttctgcaactggaaatcaaatacgttgcttcaccttttatgaaacatccttat
ggaaaatttgggaggcaatactctggcattgtggactcctctatgtttgatggtcttcaa
gatgtagaccctaacattgatatgcctggttgtgattcctctgccaatgtcgaaggaaca
gtatgggaaatcattccaaacataaaggaaaaactttacccccatcagcgtgaaggtttt
gaattcatttggaataatatagcagggggaatatatcgtgataagtctaaaaactcgtcc
agtgaaggtggaggatgcattatatcacatgctccagggacagggaagagtctactgact
attgtctttcttcagacatacttaaaagagaatccaagttgcaggccggtgattgttgct
ccatgtagtatgttactgacatgggaagcagagttcagtaagtggaaggttgatattccc
tttcacaatatgaacagtccggatttttgtggaatgggaaaaacaaatggagttgctctt
tatgagaaacttaaagttggtgtcccggatgcagatagacttgttaggcctttggtgaaa
ctgctttcctggaaatacgatggaggcattttggtgatcagttacaaccttttcactcaa
cttgctggaaaagagacaaagaggaaacaaaaatgtaaaaatctacataagcaaatcagc
aaaatccttctcgaccttcccggccttctaatccttgatgaaggacacataccaagaaat
gctgctactcttttgtggaaggctttgtctggaattaaaaccaatcgccgtatcattctt
tccggaactcctttccagaataattttgatgagctcttcaacacactctgcttagtgaga
cccacatttgctgaaggaatccggtattctactcgatacaagcataatagtaggcttggg
tgcaaaggaaacgaagcaaagcgaaactttacctcttggattggttccattagaaatgaa
atcgggggactgagggaggttagagctgtgattaagccttttgttcacgtgtataaaggc
acaattctacagactgcacttcccggtttgaggcacactctagttgtattacggcccact
gaactgcagaagaaaatcctggagcgcgttgaagaaatcctgaagcatgtacaagaaatc
ctggagtgtgttaaggaagcaaagaatctgttcaagagaagaagagagaaagaaaaaaag
aatgcacttgattttgatcgttatgtgtccatgatctcaatccacccctcattgttgaag
cagctgttgaagcagcttccagacctgaaggatattaatgaagttgtaagctccattgtt
agcacggaagagatagaaaggataagactgaaacctgaggaaggagtgaaaacaagattc
ctcatgaatctgcttaagcttagtgaagctctggaggaaagggttatagtttttagtcaa
tatcttggacctttacggttaataatggagcagcttgagtatcattttaaatggaaggaa
ggggaggagatattgttcatgcacgggaaatgtgatataaaacagcgtcagtgctccatt
aatgtgtttaatgatccagaaagcaaagcaagggtgttgcttgcatcaataaaggcttgc
tctgagggtataaatcttatcggaggttcaagggtggtgttgcttgatatgacgtggaac
ccatccgtggaaagacaagctatatgccgcgcatataggctaggccagaaaaaggttgta
tacgtttaccgacttatctcatccgtgattgaggggcacaaatttaatcgacaagctggc
aaggatcgggtatctgagttattgttctcttctgatgagcatcaggagcaagtctgtgat
attgtggaggataaagttttggaagagatgctgcagcatggaacaatcaagtcaatgttt
gaaaagatcattaatgagcccaaagattgtgagttcattgaagcttttgaggatcaagaa
aaggtatctgtcccctcgtag
DBGET
integrated database retrieval system
