Gossypium hirsutum (upland cotton): 121213886
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Entry
121213886 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121213886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
121213886
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
121213886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
RTX
Motif
Other DBs
NCBI-GeneID:
121213886
NCBI-ProteinID:
XP_040943159
LinkDB
All DBs
Position
D01:17191315..17198593
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AA seq
789 aa
AA seq
DB search
MLNGTEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYY
ELYMRAFDELKRLELFFKDDSKHGVSVVDLYELVQHAGNILPRLYLLCTVGSIYIKSKEA
PAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQISRDKLPDIGSEYEGDADTVMDAVDFVLQ
NFTEMNKLWVRMQHQGPGGVREKREKERSELQDLVGKNLHVLSQIEGVDLEMYKETVLPR
VLEQVVNCKDDLAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDVKTVLSRLMDR
LSNYAASSTDVLPEFLQVEAFSKLSNAIGKVIEAQLDMPAVGAITLYVSLLTFTLRVHPD
RLDHVDQVLGACVKKLSNIPKLEDSRAMKQVVALLSAPLEKYNDIVTALTLSNYPRVMDH
LDIGTNKLMAMVIIQSIMKNNSCISTADKVEVLFELIKGLIKDIDGADVDELDEEDFKEE
QNSVARLIHMLYNDEPEEMLKIICIVRKHTMVGGPKRLPFTVSSLVFSALRLLRQLQGQE
GDIVGEEASMTPNKIFQLLTQIIESLSAVPSPELALRLYLQCAEAANGCDIEHVAYEFFT
QAFLLYEEEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSARLLKKADQCR
AVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSGGPVSLFVEILNK
YIYFFEKGNKQITSSAIQGLIELINTEMQSDSTNPDSVADAFLASTLRYIQFQKQKGGVM
GEKFESIKL
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacggaacagaggacgaagagaaatggctggcggaagggatcgctggtattcaa
cacaatgctttttatatgcatcgagctttggattctaataatcttagagaagctctcaag
tactctgctcaaatgctatcggagctccggacctccaaactctctcctcacaaatactat
gaactttatatgcgagcttttgatgaattgaagagattggagttattcttcaaagacgac
agcaaacatggtgtctctgtggttgatctgtacgagcttgttcaacatgccggcaatatt
ttgcctagattgtatcttctatgtacagtaggatctatctatatcaaatctaaggaggct
cctgctaaggaagttcttaaagaccttgtggaaatgtgtcgtggagttcaacatcccata
cgtggactctttttaaggagttaccttgctcaaataagccgagataagttaccagatatt
ggttccgagtatgagggtgatgctgacactgtgatggatgctgtggactttgtgctacag
aatttcaccgagatgaataaactttgggtgcgaatgcagcatcagggacctggtggagtt
agagagaagcgagaaaaggaaaggagcgaacttcaagatcttgtagggaaaaacctacat
gttctgagtcagatagaaggtgtggaccttgagatgtacaaagaaacagttcttcccaga
gtcttggagcaggttgtcaattgcaaagatgatcttgcccaatattatctaatggattgc
attattcaggtattccctgatgagtatcacttgcagacgctcgagacattgttgggtgct
tgtccccagctccagccaacagtcgacgtcaagacagttttgtctcgactaatggataga
ctttcaaattatgctgcttcaagtacagatgtattacctgaatttctacaagtagaagcc
ttctctaaattgagcaatgcgattgggaaggtcatagaagcacagttagacatgcctgct
gttggagctataactttatatgtctctcttcttacctttactcttcgtgtccatcctgat
cgtcttgatcatgtggatcaagtactgggagcttgtgttaagaagctctctaacatacca
aaacttgaagatagccgggcaatgaaacaagtggttgcacttttgagtgctccattggag
aaatataatgatattgtaacagccttgactctttctaattatccacgtgtaatggaccat
cttgatattggaacaaataagcttatggcaatggttatcattcaaagcattatgaagaac
aactcttgcatttcaactgcagacaaggttgaggttttgtttgaattaataaaaggactc
attaaggacattgatggtgctgatgtggatgagcttgatgaggaggatttcaaggaggaa
caaaattcagttgctcgactcatacacatgctttataatgatgaaccagaggaaatgttg
aagattatatgtattgtgaggaagcataccatggttgggggaccaaaacgcctacccttt
acagtttcttcacttgttttttcagcacttaggttgcttaggcaattgcaaggtcaggag
ggggatatagtgggagaagaagcatcaatgacaccaaataaaatttttcagctcttgact
cagatcattgagtccctttcagctgttccatcccctgaacttgcattaaggttgtacctg
caatgtgctgaggcagctaatggctgtgatattgagcatgttgcgtatgaatttttcaca
caggcgtttctattatatgaagaagaaattgcggactctaaagcccaagtgactgcaatt
catctgataattgggactctccagaggatgaatgtatttggtgttgagaacagagatact
ttgacacacaaagccacaggatattcagctcggctattgaagaaggctgatcagtgcaga
gctgtttatgcatgttcccatctattttgggttgatgatcaggatggcataaaggacggg
gagagggtcctcctttgcctaaagcgagcattgagaatcgcgaatgctgctcagcaaatg
gcaaatgttgcacgaggtagcggtgggccggttagtctctttgttgagatattgaacaag
tacatctatttctttgaaaaaggaaataagcaaatcaccagttccgcaatccaagggctg
atagaattaattaatactgagatgcaaagtgattccacaaaccctgatagtgtggcggat
gctttccttgccagcaccttgcgttacattcagttccaaaaacaaaaaggcggtgtaatg
ggtgagaaattcgaatccattaaactgtaa
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