Gossypium hirsutum (upland cotton): 121214677
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Entry
121214677 CDS
T04793
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121214677
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121214677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
121214677
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121214677
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121214677
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121214677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_DCAF12
EIF3I
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
WD40_like
YNR034W-A-like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
121214677
NCBI-ProteinID:
XP_040944574
LinkDB
All DBs
Position
D02:42153042..42154621
Genome browser
AA seq
409 aa
AA seq
DB search
MGAIDWSKSPKPSNTTISFSFEWAMKNLSSGIHPTLPTKQTLKHQGDRLEIPSAAARCEW
DFSLSTVVSSSANAAVSDALGSIEFDPSNTVVATGGIARKIRIYSLNSLLPEDNIQLLTR
GEQNDTAFLDHVNACSFYICTPAKLSSLRWRPGSGGRLLGSGDYDGVVMEYDLERKLPVF
ERDEHGGRRVWSVDYSHWDPFVGASGSDDGTMQMWDPRCGGEGGECVAKVQPAAARSSVC
CVEFSPFGDSLIALGCADRMAYAYDVRKMVEPLHVLEGHTKTVTYVRFVDAQTMVSAGTD
GCLKLWNMSDCGLIRTCKGHLNSRSFVGLSVWRHGGLLGCGSENNQVFVYDKRWDEPICA
RGLEPMARPGFGHAFVSSVCWRQVQEDHCTLLAGGSDGVLQVFVGTKIS
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgggagccattgattggtctaaaagtccaaaaccctccaacaccaccatctccttttca
tttgaatgggcaatgaaaaatctctcctctggaatccacccaaccctccctacgaaacaa
acactaaaacaccaaggagatcggttggaaataccatcagcagcagctcgttgtgagtgg
gatttttctctttccaccgtcgtctcctccagcgccaatgccgccgtctccgacgctctt
ggctccatcgagttcgacccttctaataccgtcgtagcaacaggagggatcgcaagaaag
attaggatttacagtttgaattctttgctgccggaagacaacatccaattattaacccga
ggtgaacaaaacgatactgcctttctagaccatgttaatgcatgtagcttttacatatgt
actccagctaagctcagcagccttagatggagacccggttccggaggccgccttctcggt
tcgggagactacgacggggtggtcatggaatatgatctagagcggaagcttccggtcttc
gaacgggatgagcacggcgggagacgggtttggagcgtggactattcgcattgggatcca
tttgttggtgcatctggctcagatgatggcaccatgcaaatgtgggacccacgatgtggc
ggcgaaggaggggaatgcgtggctaaggtgcagcccgccgcggctcgtagctcggtctgt
tgcgtggagttcagccccttcggcgattcgttaatagcgctgggatgcgcagaccggatg
gcgtatgcgtacgatgtgcggaaaatggtggagcctttgcatgtgttggaaggacatacg
aaaacggtgacgtacgttagatttgtggatgcccaaacaatggtttcagcaggaacggat
gggtgtttaaagctgtggaatatgagtgattgtggtttgattagaacgtgcaaagggcat
ttgaatagtcgaagcttcgttgggctgtcagtttggagacatggtgggttgcttggatgt
gggtcagaaaataaccaggtatttgtttatgataagaggtgggatgagcccatttgcgcg
cgggggttggagccaatggctagacctgggttcggccatgccttcgtcagtagcgtatgc
tggaggcaagtccaggaagaccactgcacacttttggctgggggttccgatggggtttta
caggtttttgtgggcacaaaaatatcatag
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