Gossypium hirsutum (upland cotton): 121215397
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Entry
121215397 CDS
T04793
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121215397
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
121215397
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GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121215397
NCBI-ProteinID:
XP_040945795
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Position
D03:13627204..13641189
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AA seq
352 aa
AA seq
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MEFDGEIVKFNVYDAISHPSEILSVNCIDIIDSLVEENFETIYGDNSELNEIEFVNKLLS
PNTKLLPSVIQAPELELEPTGKTRKLDIQELEEIRNDAYENAHIYKDKTKLFHDKRIGQG
GGGGGVIDVVAKFGAKPLLDAWKEACASTPPAKIVIPKGIYFLSTATLDCPCKAPIELQV
EGIVKAPADPGAFKEPNWIAFNRIENFKLSGRGLFDGQGTTTYKREGCKNHDYCGSLPIL
IKQNLRFDFLTNAMIQDITTKDSKQFHVNVLGCKNITFEHFTVSAPDESPNTDGIHIGRS
DGVNVLNSEIKTGDDFVSIGDGSKNLVINGVTCGPGPGPGPGPELDLQDHNV
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgatggggagattgtaaagtttaatgtctacgacgcaattagccatccaagc
gaaatattgagcgtaaattgcatcgacataattgactctttggtggaagagaattttgag
acaatttatggagataattctgaacttaatgaaattgaatttgttaataagttattatct
ccaaatactaaactgttaccttctgttatacaggcaccagagttggagttagaacccacc
ggaaagacaaggaaattagacatccaagagttagaagaaattcgcaatgatgcctacgaa
aatgctcacatttataaagacaagacaaagttgtttcacgataagagaataggtcaagga
ggaggaggtggtggtgttattgatgttgttgcaaagtttggtgcaaagccattgttggat
gcttggaaagaagcatgtgcctcgacacctccggcaaaaattgtgattcctaaagggata
tattttttaagtacagctaccttagattgtccttgcaaggctcctattgagcttcaagtt
gaaggtattgtgaaggctccagcagaccctggtgcttttaaggagcctaactggattgcc
ttcaatagaattgaaaatttcaaattgtctggcagaggacttttcgacggccagggaacc
actacttacaaaagggaaggctgcaaaaaccatgattattgtggttcacttccaatttta
attaaacagaacctaaggtttgattttttaaccaacgcaatgatacaagatataactacc
aaagacagcaagcagttccatgttaatgttctaggatgcaaaaacattacttttgaacat
tttactgtatctgcacctgatgaaagcccaaacacagatgggattcacatcgggagatca
gatggggtaaatgttcttaactcggagataaaaactggtgatgattttgtttcaattggg
gatggttccaaaaatttggttatcaatggagtaacttgtggacctggacctggacctgga
cctggacctgaactggacttgcaggatcacaatgtttga
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