Gossypium hirsutum (upland cotton): 121215567
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Entry
121215567 CDS
T04793
Name
(RefSeq) non-structural maintenance of chromosomes element 1 homolog isoform X1
KO
K22817
non-structural maintenance of chromosomes element 1 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
121215567
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121215567
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121215567
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Atypical E3
121215567
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
121215567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_Nse1
zf-RING-like
SLX1_C
zf-HC5HC2H
Zn_Ribbon_YjdM
PHD
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
121215567
NCBI-ProteinID:
XP_040946290
LinkDB
All DBs
Position
D03:48831769..48833601
Genome browser
AA seq
316 aa
AA seq
DB search
MAVLSWKHHTLIQSLLERGPLTEKEFHFIFTGITGQNPGTHQGKFNDYLLKINRELSYVQ
LDLRACRDPYDGRVYFGVVNNVSDDQSKLGTKYSVPQIAFFKAIVEAIAQDVTAEGTICN
LDALNIKLENQVLNSSGLQSQDVPAAFKNFTVSHKEKTLDQLVKDKWLCYTEDDNIGLGI
RSILDLRSWFHNAGVPSCQVCNEAGFKAKLCPNDGCAVRIHHYCLKKRFSQKGMLVCPSC
DTQWQYQPPKAEPIEVKDEETEPVQSQPSSNPGPSQPSLRSKRKRQRLDNVETAGCSSQA
SGANRKRVTRSSAHPR
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgctaagctggaagcaccacacgctcattcaatcgttgcttgaacgcggtcct
ctaacggagaaagagttccacttcattttcactggcatcacgggccaaaacccaggtacc
catcaagggaaattcaatgattatcttctcaagataaacagggaactttcgtatgttcaa
ttggatttaagggcttgtagagatccgtacgacggtcgagtttattttggagttgttaac
aatgtttcggacgatcaatcgaagcttggaaccaaatattctgtccctcaaattgctttc
tttaaggccattgtcgaagcaatagcacaagatgttacagcagagggcactatctgcaac
ctggatgctctcaatattaagttggagaaccaggttctaaacagttcggggttgcaatct
caggacgtccctgctgcattcaagaacttcacagtgtctcacaaggaaaaaacactcgat
caactagtgaaagacaagtggctttgttacaccgaagacgataatatcggacttggtatt
aggtccattctcgatctgcgaagttggttccataatgccggggttccttcatgccaagtc
tgcaatgaagctggatttaaggccaaattgtgcccaaacgacggttgtgcagttcgaatt
catcattactgcctaaagaagagattttctcagaaaggcatgttagtttgtccaagttgt
gatactcagtggcagtaccagccacccaaggcggaacccatagaagtcaaggatgaagaa
actgagcccgtccaaagccagccatcttccaatcccggtccgagtcaaccatctttaaga
tccaagagaaagaggcaaagactcgacaatgtggaaactgccgggtgtagctctcaggca
tcaggtgctaataggaaaagagtaactaggagctctgcacatccaaggtga
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