Gossypium hirsutum (upland cotton): 121215623
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Entry
121215623 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121215623
03015 mRNA surveillance pathway
121215623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121215623
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121215623
5.6.2.5 RNA 5'-3' helicase
121215623
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121215623
mRNA cycle factors
Common to processing body (P body) and stress granule
121215623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
121215623
NCBI-ProteinID:
XP_040946558
LinkDB
All DBs
Position
D03:complement(54213461..54223249)
Genome browser
AA seq
1262 aa
AA seq
DB search
MDSQFDTASQPDPATDAYTFLEFNTQGESDFEYTDFRDPIRSWPTPSDATVVDRSASDHH
SDTPASSSPSSVPKGAGRGATSNNNNSNSNSVSNSGAVVDSLATGISGLNFEETVGDEDG
GYEYGKGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEKEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYEKMMKESQSKDNVTVRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVQHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC
LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLILLGVKPIRLQVQYRMHP
CLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQALWN
GLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPSDNFGSAASTS
PNADRRGSRARGAYMPPGPPNGTHKPGVHPSGFPMPRVPLPPFPGPQPYAIPARGAVHGP
VGAVPQVPQPGTRGFGAGRGNGGAPIGSHLPHQQGTQQNIGTIGSSFNFPLENPNSQPSV
GGPLSQPGFVNNVQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNIADFSTQASQSG
YAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMNHGSQGLFTQAGFNDPSH
DDASQSHFGVSNPNQLQSQGLMNSLYSQSFSHYNTQPLNLPAPQQQPQQDQGSQNQKLHY
NG
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaattcgatacggcgtcgcaacctgaccctgccaccgacgcttataccttc
ctcgaattcaacacccaaggcgagtccgatttcgagtacaccgacttccgtgatccgatt
cgttcttggccgacgccttctgacgctactgtcgttgatcgctcagcctccgaccaccat
tccgacactcccgcgtcctcttctccttctagcgttccgaaaggcgctggccgtggcgcg
acgagcaataataataacagcaatagcaatagtgttagcaatagtggggccgtggttgat
tcgttagcgacggggattagtggattgaattttgaggagacggttggggatgaggatggc
ggttatgagtatgggaaaggggatttcgcggaacacgcttgtcgatattgtggggtttct
aatccggcttgtgtggttcgttgtaatgttccttcatgtaggaaatggttttgtaattca
agagggaatacgtcgggatcgcatattgttaatcatcttgtacgagctaaacacaaggaa
gtttgcctccataaagatagtcctttgggagaaacaattcttgaatgctacaactgtgga
tgcagaaatgtcttccttcttggttttatatctgctaagacagagagtgttgttgttctt
ctttgtagagaaccttgtttgaatgtaaatgctttgaaagacatgaattgggacttgagt
cagtggtgcccccttattgatgatagatgctttctgcagtggctggttaagatcccgtct
gaaaaagaacagctacgggcgcggcaaataagtgctcaacaaataaacaaggtagaagag
ctttggaagacaaatcctgatgcctcccttgaagatcttgagaagcctggtgtagatgat
gaaccacagcctgtggccttgaagtatgaagatgcttatcagtatcaaaatgtttttgct
ccacttatcaagcttgaagctgattatgaaaaaatgatgaaagaatctcaaagcaaggat
aatgttacagttcgatgggatattgggttaaacaagaagcgtattgcatattttgtcttt
ccaaaggaagacaatgagctgcgtctagtacctggtgatgagttgcgtctgcgttattca
ggagatgctgctcatcctgcatggcagtctgttgggcatgtgatcaagctaacggcacaa
gaagaggttgcgctagagctccgtgctagtcagggagttcctgttgatgtgaaccatggg
ttcagtgttgattttgtgtggaagagtacaagttttgaccgaatgcaaggggcaatgaaa
acatttgcagttgatgaaactagtgttagtggatatatttaccatcatctgcttggtcac
gaggttgaggtgcagatggttcgcaacgcactgcctcgtcgttttggtgcccctggtctg
cctgaattgaatgcatcccaagtttttgccgtgaagagtgttcttcagaagcctataagt
ttgattcaaggtccccctggaactggaaaaactgttacttctgctgccattgtatatcac
atggctaaacagggtcaggggcaggttctggtctgtgctccaagtaatgttgctgttgat
cagctagctgaaaaaataagtgccactgggttaaaggttgtaagactttgtgcaaaatca
agagaagctgtaagttctcctgttgaacatttgaccctgcattatcaggttcaacatctt
gacacatctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggtgag
ttgtcgagcagtgacgagaaaaaatacaaagcactgaagcgagcaactgagagggaaata
tcccaaagtgctgatgtcatttgttgcacttgtgttggggctggagatcctagattggct
aattttaggttccgtcaggtacttattgatgaatctactcaggcgacggaacctgagtgt
ctcattcctttagttcttggcgcgaagcaggttgttcttgttggtgatcattgccaactt
ggtcctgttattatgtgcaagaaagctgcccgtgctggattagcacagtctttgtttgaa
cgtctaattttacttggtgttaagccaattagattgcaggttcaatatcgtatgcaccca
tgtttgtcagagtttccttctaacagcttctatgagggcaccttacaaaatggagtgaca
atcaatgaaaggcaatcttcgggcattgatttcccttggcctgtgcctaatcgtcccatg
tttttttatgtacagatggggcaagaggagattagtgctagtggaacatcatatctaaat
agaactgaggctgcaaatgttgaaaagattgttaccacattcttgaggagtggtgttgtt
cctagtcagattggggtcataacaccttatgagggacaaagggcgtatattgtgaattat
atgtcaagaaatggtgctttgagacagcagctttacaaggaaatcgaggttgctagtgtc
gattctttccaaggaagggaaaaagattacatcatcttgtcttgtgtgagaagtaatgag
catcagggtatcggattcctaaatgatcctcgcaggcttaatgttgccctaacacgtgct
cgatatggtatagtaattcttggaaatcctaaagttcttagcaaacaagctctgtggaac
ggtttattgacacattacaaggaacatgagtgcctggttgaaggacccctcaataacttg
aagcagagtatggttcaattccaaaagcccaaaaagatttacaatgaccggagacttttc
tttggaggtggacctgggattgtgcctagtgataattttgggtctgctgcctcaactagt
ccaaatgctgatagaagaggcagtcgtgctcggggtgcttatatgcctcctggtccaccc
aatggtactcacaagcctggagtgcacccttctgggttcccaatgcctcgggttccactt
ccaccttttcctggtcctcagccttacgctattcctgctcgtggagctgtacatggacca
gtgggagctgttcctcaggtacctcaacctggaactcgaggctttggggctgggcgtggt
aatggtggtgctcctatcggtagtcatcttccacaccagcaaggcacacagcaaaacatt
ggaactattggatcttctttcaacttccctctggagaatccaaatagccagccatccgtg
ggtggtccattatctcagcctggatttgtcaacaatgtccaagggccgagtcaaactttc
cgtgatggattttcaatgggaggaatgtcccaggacttcttgggtgatgacttcaaaagc
caaggctcacatgtcccttataacattgctgatttttctacacaggcttctcagagtgga
tatgctgttgattacgttacacaaggagcacagggcgggtttccagggaacttcctaaac
cagaattctcaagctggatattctcgttttggttctggaaatgatttcatgtctcaggac
tacatgaatcatggatcacaaggcctgtttactcaggctggctttaatgacccttctcat
gatgatgcatctcaaagccactttggcgtgtctaatcccaaccagcttcagtcccagggc
ttgatgaattctctctactcccagtccttttcccactacaacacacagccactgaacttg
ccggctcctcaacagcagcctcagcaggaccagggctcccaaaaccagaaacttcactat
aacggttaa
DBGET
integrated database retrieval system
