Gossypium hirsutum (upland cotton): 121215949
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Entry
121215949 CDS
T04793
Name
(RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform X1
KO
K18442
brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121215949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
121215949
Membrane trafficking [BR:
ghi04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
121215949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
Sec7-like_HUS
BIG2_C
Sec7-like_HDS
DCB
Motif
Other DBs
NCBI-GeneID:
121215949
NCBI-ProteinID:
XP_040946829
UniProt:
A0ABM2ZW12
LinkDB
All DBs
Position
D04:complement(53360892..53369274)
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AA seq
1708 aa
AA seq
DB search
MSASQTLGGPSRCGRVLGPSLDKIIKNAAWRKHSHLVSSCKSVLDKLETLPDAALPDPSS
PLLGLSSSDADFVLNPILLALDSNYAKVADPALECVFKLFSAGVVRGEIDGKNSDSIMYK
IVDSVCKVGGIGEESVELAVLRALLSAVRCPCVLIRGDCLLQVVRTLYNIYLGGLNGTNQ
ICAKSVLAQIMLIIFSRADEDSMDVSITTVSVSELLEFTDKNLNEGNSIYFCQNFVSEVM
SDSEGVPDLKLSQPVPVSQNGESKDEGEEIGSEKMKDEVELCPGGISSKIREDGFIVFKN
LCKLSMKFSSQENPDDQVLLRGKTLSLELLKVIMDNGGSIWCSTERFLNAIKQFLCLSLL
KNSALSVMSIFQLQCSIFMSLLTKYRSGLKAEIGIFFPMLILRVLENVLQPSFLQKMTIL
DMLEKIAGDSQIIIDIFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTTLSAVQDITF
RHESVKCLVGIIKSMGAWMDQQLKIGDSDLPSGSESETSAESHLTPSAEDGLVPDYELHL
ELNSELSDSATLEQRRAYKIELQKGVQLFNKKPSKGIEFLIKTKKVGNSPEEVASFLKKN
TAGLNETMIGDYLGEREEFALRVMHAYVDSFNFKSIDFGEAIRFFLSGFRLPGEAQKIDR
IMEKFAERYCKCNPNSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKSDFIRNNRGIDD
GKDLPEEYLGALYDQIVKNEIKINADSSVPQSKQANSLNKLLGLDGILNLVSWKQTEEKP
LGANGHLIRHIQEQFKAKSGKSESVYHAVSDISILRFMVEVCWGPMLAAFSVTLDQSDDR
LTTTQCILGFRYSVHVTAVMGLQTQRDAFVTSVAKFTFLHCAADMKQKNVDAVKAIISIA
IEDGNHLQEAWEHILTCLSRIEHLQLLGEGATTDASFLSVSNTEQSLMKKGTLQNPAVMA
VVLGGSYDSTTVGVNSSRFVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVA
FVKALCKVSMLELQSPTDPRVFSLIKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSE
SLSVAIFVMDSLRQLAMKFLEREELANYNFQNQFLRPFVIIMQKSNSAEIRELIVRCISQ
MVLSRVTNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPHITETDATVFTD
CVRCLIKFTNSRFNNDASLNAIAFLRFCAVKLAEGGFVCTNKRSDDGSSVSSINKDDSDV
KGFAYIDDHGSYWLPLLTGLSKLTSDSRLDIRRSSVEVLFNILKDHGHLFSRVFWVGIFN
SVILPIFDGVCGRREMPVKDEQNLPTLRSSHHDGSTWDAETSTVAAQCLVDLYIGFYSVL
RPQLSNVLSVLTGYLRSSIQGPASNGVVAMFRLIGELGSRLSEEEWREICLAIKEAAISM
FPGFMKLLRTMDDIEVPDNSPSRSSTEASTDHGFTDHELEDANLQTAAYVVSKMKSHIAI
QLLIMQVIIDMYKTNLQFLSAANINIIVDIVSSVASHAQELNSETTLRKKIQKACSILEL
SDPPLVHFENEAYQNYLNFLQDLIKNNPSVVEKMNLESQIVAVCEKILQIYLNCTINQNM
VQISVNKPTSRWVLPLGSAKREELAARTSLLVSALKTLSGLEKDRFRKYIASFFHLLVAL
IRCEHSSSEVQRVLSDLFQSSIGPIIKQ
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcttcccaaacactcggcggcccgtcgcggtgcggccgcgtgcttggcccatct
ctcgacaagatcatcaaaaatgccgcctggcggaaacactctcatcttgtttcctcatgc
aaatccgttctagacaagcttgagactctccccgacgccgccttacctgatccgtcttct
cctttgctcggcctttcctcttccgacgccgacttcgttctcaatcctatcctactcgct
ctcgactccaattatgccaaagttgccgatcccgctctcgaatgtgtcttcaaattgttc
tctgccggcgtcgttcgcggcgagatcgacggaaaaaactccgattcgatcatgtacaag
attgtcgatagtgtatgcaaagtcggcggcattggcgaggaatcagtcgagctcgctgtg
cttcgagctttactttccgccgttcgatgtccctgtgttttgatccgtggggattgcttg
cttcaggtagttagaactttgtacaacatatatttaggtggtttaaatggaaccaatcag
atctgtgctaagtccgttttagctcaaattatgctcatcatattctcccgtgctgacgaa
gactccatggatgtttctattacaacagtgtcagttagtgagcttttagagtttactgat
aagaacttaaatgaagggaattcaatctatttttgtcagaatttcgttagtgaggttatg
agtgatagtgaaggggtaccagatttgaagctttcgcagccggttccagtgtcgcaaaat
ggtgagtctaaggacgagggggaggaaattgggtcggaaaagatgaaggacgaggtggaa
ttgtgtcctggtgggattagtagtaaaattagggaggatggatttattgtttttaagaat
ttgtgcaagttatcaatgaaattttcatcccaggagaatcctgacgatcaggttcttttg
agagggaagacattatctttggaacttctcaaggttattatggataatgggggttcaatt
tggtgctcaactgagaggtttcttaatgcaattaagcaatttctctgcttatcattgtta
aaaaacagtgcattgtcagtgatgtccattttccagctccagtgttctatttttatgagc
ttgttgacaaaatatagatcagggctgaaagctgaaattggaatattctttcccatgcta
atcctacgagttctagagaatgttctccagccaagttttctacagaaaatgaccatcctt
gatatgttggaaaagattgctggagattcacagattatcattgatatatttgtgaactac
gactgtgatgtggattcacctaatatatttgaaaggattgtcaatggccttctgaaaact
gctctagggccaccaccgggttcaaccacaactttgtctgcagtccaggatattactttc
cggcatgaatcagtgaagtgcttagttggcatcatcaagtcaatgggagcttggatggac
caacagctgaagataggtgattctgatttgcctagtggctctgagagtgaaacttcagca
gagagccatttaaccccaagtgcagaagatggacttgtccctgattatgaattacatctg
gaattaaattctgaattgtcagattctgctactcttgagcaacgccgggcttacaagatt
gaactccagaaaggagtccaattgtttaacaagaagccatccaaaggcatcgagtttctt
ataaaaaccaaaaaagttggcaactctcccgaggaagtggcttcttttcttaagaaaaac
actgctgggctgaatgaaaccatgattggtgattatttgggtgaaagggaggaatttgct
ttgagagtcatgcatgcctacgtagattcctttaatttcaaatctatagattttggtgaa
gcaataaggttcttcctaagtggcttcaggttgccaggagaggcacagaaaattgaccgc
atcatggaaaagtttgctgagcgctattgtaaatgcaatccaaactcatttactagtgca
gatactgcttatgtactggcatactctgtcataatgctcaacactgatgcccataatagc
atggtcaaagataagatgaccaagtctgatttcatccgaaacaaccgaggaatagatgat
ggcaaggatttacctgaggagtatcttggtgctctttatgatcagattgtgaaaaatgaa
attaagataaatgctgattcttctgttcctcaaagcaagcaggcgaacagcttaaataag
ttattgggtttagatggtatactcaatctcgtcagttggaagcaaactgaagaaaagcca
ttgggtgcaaatgggcatcttattagacatatccaagagcagtttaaggcaaagtcggga
aaatcagagtctgtttatcatgctgtttcagatatatcaatcttgaggtttatggtggag
gtctgctggggacccatgctggctgcatttagtgtcacacttgaccagagtgatgataga
ctcactaccactcagtgcatactgggctttcgatattctgtgcatgtaactgcagtaatg
ggcttgcagacgcagagagatgcttttgtcacatctgtggcgaaattcacttttctccat
tgtgctgcagatatgaaacaaaagaatgttgatgctgtaaaggcaataatatctatagcc
attgaagatggtaaccatcttcaggaagcctgggagcatatattgacatgcctgtccaga
attgagcatttgcaactgttgggagaaggtgcaacaactgatgcatcctttttatctgtg
tctaacactgaacaatctctgatgaaaaaaggaactctccagaatccagctgtgatggca
gtcgtcctagggggttcatatgatagcaccactgttggagttaatagttcaagatttgta
actcctgagcagattaaccacttcattgcaaacttgaatttattggaccagataggaaat
ttcgagttgaaccatgtttttgcacatagccaaaggttaaacagtgaagcaatagtggca
tttgtgaaagccctctgcaaagtttctatgttagagttgcagtctccaacagaccctcgt
gtttttagcctcataaaactagttgaaattgcgcattacaatatgaatcgcatcagatta
gtttggtctcgaatgtggaatgttctttccgatttctttgtttcagttggattgtctgag
agtttatctgtagcaatttttgtgatggattcattgcggcagcttgctatgaagttctta
gaacgtgaggaattggcaaactataattttcagaatcaatttttgaggccatttgtgatt
atcatgcagaaaagcaactctgcagaaataagggaattaatagttcgatgcatttcccag
atggtccttagccgtgtcactaatgtgaaatctggatggaaaagtgtttttatggtgttc
acagctgctgctgctgatgagcggaagaatattgtcttgttggcttttgagacaatggaa
aaaatagtgcgagaatactttcctcatataactgagacggatgcgaccgtttttactgat
tgcgtaagatgcctcatcaagttcacaaatagcaggtttaacaatgatgctagcctcaat
gctattgcatttctccggttttgtgctgtcaaacttgctgagggtggatttgtttgcact
aataagcgctcagatgatggttcatctgtttcaagtataaataaggatgattcagatgta
aaaggtttcgcttatatagacgatcatggatcatattggcttcctttgctaacaggttta
tcaaaactaacatctgactcaagattagatatccgaaggagttcagtggaagtgcttttc
aacatcctgaaggatcacggtcatcttttctcacgagtattctgggttggcatttttaat
tctgttattctccccatatttgatggtgtatgtggaaggagagagatgcctgtaaaagat
gagcaaaatttaccaactttaagatcttctcatcatgatggaagtacatgggacgctgaa
acttccaccgtggcagcacagtgtctagtggatctatatattggtttttacagtgtattg
aggccccagctatcaaatgtgttatcagtactgacaggatacttgagaagctcaatacag
ggtccggcaagcaatggggttgtggcaatgttccgtttgataggagaattaggaagcaga
ctctcagaagaggaatggcgagaaatctgtctagctataaaagaagcagccatatcaatg
ttcccagggtttatgaagcttttgagaaccatggatgacattgaggtgcctgacaattct
ccatcccgttctagtactgaagcaagtactgatcatggatttaccgatcatgagcttgag
gatgctaatctgcaaactgcggcttacgtggtttcaaaaatgaagagtcatattgccata
cagctgctcattatgcaggttataattgacatgtacaaaacaaatctacaattcttgtca
gctgccaacatcaacatcattgtcgacatagtgtcttctgttgcatcccatgctcaggaa
ctgaactctgagactaccctgcggaagaaaatacagaaagcgtgttcaatcttagagctc
tcggatcctcctttggttcacttcgaaaatgaggcttatcaaaattacctcaatttcctc
caagatttaatcaaaaacaatccatccgttgtcgagaagatgaacctagaatcacaaatc
gtggcagtgtgtgaaaaaatattgcagatatacctcaactgtaccattaaccagaatatg
gtacagatatcagttaacaagccaacgtcccgttgggtactaccgttgggttcagccaaa
agggaagaattggcagcaagaacatctttacttgtgtcagcattgaagactttgagtggt
ttggagaaggatcgctttagaaaatacattgcaagtttctttcatctgttagtcgctctg
atacggtgcgagcatagctccagcgaagttcaacgtgttctaagcgacttattccagtca
tctataggtccaataataaagcaataa
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integrated database retrieval system
