Gossypium hirsutum (upland cotton): 121216004
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Entry
121216004 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC121216004
KO
K19022
AP-5 complex subunit beta-1
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121216004
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
121216004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_C
Motif
Other DBs
NCBI-GeneID:
121216004
NCBI-ProteinID:
XP_040947015
LinkDB
All DBs
Position
D04:57768764..57773879
Genome browser
AA seq
1115 aa
AA seq
DB search
MAEKPMPKPILPQDWESLVEDFQYGGFRREKWRSLSPSVVELALSSILKKEFPFKIPLVI
FLDEFSDLLFPQDPSLASLMDRLVETLRAVVQSPTDGVHVTYALKEQMMVSTTSVLISTN
SVESVEVRFTESVVELLLAVINRPNHGPDRHARATACECLRELEKAYPCLLSDIAGHLWS
LCQSERTHASQSYILLFTTVIHSIVNRKLSVSILNTSVPLIPFNVPQCVVELEKEGLLEL
NYKELRRAMSFLLEWPQVLTPCGMMIFMGMIMPLAVALDLQPSMLKVQFFGMIYSFNPLL
YHVVLVMYSHFSEAFNEQEIEIVRRLYLVSLETQQHLVFRLLSVHWLMVFLNRLMVGKKK
SIVETGFMFYPSVFDPLSLKALKLDLLAFCSVCIDKLNPQSVSDMEGNSVVKLFQGGLVS
VLGFKWLPPWSTETAVAFRTFHKFLIGASSHSKADPSTTTALMESAIFNHLKGMFVDLIL
EFQRLVPVIVAFIDRLLGCQKHLWLGECLLQTIDANLHPRVAIDYRLVSYFPIFDRIAEN
QTIPPHRLLELLTKFMAFLVEKHGPDTGVKSWSRGSKVLGICRTMLTHHQSSRLFLGLSR
LLAFTCLYFPDLEVRDHARIYLRMLICVPGVKLRGMLNLGEQLLGISPSSHSGSFFNVPS
PRHSQDPKKLKNIASYIHLERMIPLLVKQAWSLSLLPLRVGSNKPDFSGCFRDGEASTDE
RELDANIQVETVLDGQVTDKPQAPLYVMDSKVSEILAILRRHFSYIPDFRHMPGLRVKIP
CYLRFDAESFNNVWGGESPKSGLHGVDALPAIYATVLKFSSLAPYGSIPTCHIPFLLGQP
PTSGDFRDENVSLDIVATLDGDGGSEEDIYKAPAMIELEPREPTPGMVDVFIETNGEDGQ
IITGQLQSITVGIEDLFLKAIAPPDIREDVLPDYYSDLFNALWDACGTTSNTGREIFPLK
SGKGFAAIHGTRSVKLLEIPPYALIRAIEHYLAPFVVSVSGDRLIDMVKDNGIIRDVVWQ
DEASGLLLEAPTSVAEPDSMPLYLTLVENEEEQESQLNIGKRSIGCIHVLIFLPPMFHLL
LQMEVSDASTLVRIRTDHWPCLAYIDDYLEALFLS
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaccaatgccaaaaccgattttacctcaagattgggagtctttagttgaa
gatttccagtacggcggtttccgccgcgagaaatggcggtccctttccccttccgtcgtc
gaacttgccctttcatcgatcctcaaaaaggaattccctttcaaaatccctctcgtaatc
ttcctcgacgaattttccgatctattgttcccccaagatccatcactcgcttcccttatg
gaccgcctcgtcgaaaccctacgcgccgttgtccaatccccgaccgacggtgtccacgtc
acttacgcattgaaagaacagatgatggtttcgacgacctcggttttgatctccaccaac
tcagtcgagtccgtcgaggttcggtttacggaatccgtggtcgaacttttattagcggtt
ataaaccggccgaaccatggaccggaccgccacgcacgtgccactgcttgtgagtgtcta
cgtgagttggagaaagcttacccttgtttactctctgatattgctggtcatttatggagc
ttatgccaaagcgaacgaacccatgcttcgcaaagttacattttgttgtttacaactgtg
attcatagtatcgtgaatcgaaagttaagtgtttcaattttgaatacttcggttcctttg
attccttttaatgtaccgcaatgcgttgtagaattagaaaaggaagggttgttagaattg
aattataaggaattgagaagagcaatgtcgtttttattggaatggccacaagttttaact
ccttgtgggatgatgatttttatgggaatgataatgccattagcagtagctttagattta
cagccttctatgcttaaagttcagttctttgggatgatttattcatttaatcctttattg
tatcatgttgttttggtcatgtattcgcatttttccgaagcgtttaacgagcaggaaatt
gagattgtgagaagactttatttggtttcattggaaacacagcaacatttggtgtttcga
ttgctttcagtgcattggttgatggtttttctgaataggttgatggtcgggaagaagaag
tcgattgtagaaacgggtttcatgttttatccaagcgtgtttgatccactttcgttgaaa
gcattaaagctagatttacttgctttctgttctgtttgtatcgataagttgaatcctcaa
agtgtttcagatatggaagggaattcagtagtgaagctctttcagggtggtctagtatcg
gttttgggtttcaaatggttgcctccttggagcacagaaaccgcagtggcattccgtact
ttccataagtttttgataggcgcatcatctcattccaaggctgatccttccaccaccact
gcacttatggaatctgccattttcaatcatttaaaggggatgtttgttgacttgatactg
gagtttcagagattggttccagtcattgttgcttttattgaccgtttgttaggctgtcaa
aagcatctttggttgggagaatgtctgcttcaaacgatcgatgcgaatctgcatccaaga
gttgcaattgattatagactagtttcatacttcccgattttcgataggattgctgaaaat
caaacaatacctccgcataggttgttagagctactaaccaagttcatggctttccttgtt
gagaaacatggaccagacacaggtgtaaaatcttggtctcggggtagtaaggtcctcggc
atttgcagaaccatgctaactcaccatcagagctctcgtttattccttggtttatcccgt
ctccttgcgttcacctgcctttacttccctgacttggaggttcgtgaccatgcaaggatc
tacttgaggatgctgatttgtgtacccggagtgaagcttagaggaatgctaaacctcggg
gagcaactccttggtatttctccctcgtctcattccggatcattcttcaacgtgccatct
cctcgacattctcaggatcccaagaaattaaagaacatcgcatcctatatccatctcgag
cggatgataccactacttgtcaaacaggcttggtcgttgtctttattacctttaagggtc
gggagtaacaaaccggatttttctggttgctttagggatggtgaagcctcgacagatgaa
agagaacttgatgccaatatacaagttgagactgtattagacggtcaggtaacggataaa
ccacaggcgccattatatgtgatggactcgaaagtttcagagattttagcgatattaagg
agacatttctcgtatattcctgattttagacatatgccggggcttagggttaaaattccg
tgctatttgagatttgatgcggagtccttcaataatgtttggggaggtgagtccccaaaa
agtgggttacacggagtagatgccctccctgccatatatgctacagtgttaaaattctca
tcgttggcaccatacgggtcgattccgacatgtcacataccctttcttctcggtcaacct
ccaactagtggtgattttcgtgatgaaaatgtttcactagacatcgttgctacactcgat
ggtgatggtggtagtgaagaagatatctataaagctcctgcaatgatcgaattggaacca
cgtgagccaactcccggtatggttgatgttttcattgaaacaaacggggaagatggtcaa
atcatcacgggacagttgcaaagtattacagttggcattgaagatttgtttcttaaagct
attgccccaccagacatccgagaagatgttttacctgattactattcagatttgttcaat
gccttgtgggatgcatgtggtactacttccaataccgggcgggagattttccccttaaag
agtggcaaagggtttgcagccattcatggaaccagatccgtgaagttgcttgagattcct
ccatatgctttaattcgtgccatcgaacattatctggcaccgtttgtagttagcgtgagc
ggagatcgtctcattgacatggtaaaggataatggaattatcagagacgttgtatggcaa
gatgaagcctctggacttttgcttgaagcccccacctcagttgccgaaccggacagtatg
cctctttatcttactttagtcgagaacgaagaagagcaggaaagtcagttaaacatcggc
aaaagaagtatcggttgcatccatgtcttgatttttcttcccccaatgttccatctcttg
ttacaaatggaagtaagtgatgcttcgactttagttcgtattcggaccgatcattggcca
tgcttagcttacatcgatgattacttggaggcattgtttttgtcataa
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