Gossypium hirsutum (upland cotton): 121216117
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Entry
121216117 CDS
T04793
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121216117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
121216117
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121216117
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121216117
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121216117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
121216117
NCBI-ProteinID:
XP_040947349
LinkDB
All DBs
Position
D04:38040364..38045998
Genome browser
AA seq
993 aa
AA seq
DB search
MNKIIDLDLGFLFLLENPRRSLIDPENLMALAELTFNSNQLYYLTIIAGENVHAAKAIAA
TVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKCFAARLPEVFCKHINKLILPCIRVCD
IFLELGKGFSLFRLSRKHNIQNGYTITASTTKYSCKPKAKGIVNDMAGTLANSKEESEKC
FKHIQCSRIDMFNEPVCEKKIIAVGDYDYGSDLLQIPGIEVRRTRGNVTDQGLDAPWFRA
TSSVTETIPSQRNGFNVKHGSQNYSASKSVNADPRLHRTHNISGRNSGGLSSSWKNSEEE
EFMWEMHSWLSEHDAANFSNNLRKDCWTPDVSEKMDFESQLHRPQSIHDAVSRFDRETSA
DALSTEQKDKPSFGRQISTSWTDGLPAISSSRSESYSASLGGLPTGASSSLARIGMRPQT
GPTGTSGKQCFQSVGTASPPEQSPMRQHSPSPSFPACHSHQQLQKLADPDYQQALSLPRA
DPKPSIFSGKLNVGSHRDSPQTSAPISLHPSRHYHLSQPPLPGSVQAEPSGQTQKSLLSQ
ISKVEAASALGSALERSNPLAIETSKLSSTSSLLAAVMKTGILSSTSFTGNLPTKISQDV
GQISQPPLPNCPPVFTTSGLIDAAISSDATHDAIAGAPNSSQEKVEQLPLPPGPPPSSLV
SNAPSQTSDAESKDTNPISNLLSSLVAKGLISASKKDAASLPSLPMPNQIQKSPGVESPS
ESLNKSSDIQSSSDAPRSSTMGEVSYAEPAPKCLVAPHQSTSTEVESLIGLELRPDVIRE
FHSSVIDGLLDDLPHCCSLCGLRLKLQGQLDRHLEWHEMKKTELRGSGRALRGWYVRSDD
WLAGKPGQLVLDSTDSLNKLEKTTEKAERMVPADENQCACLLCGELFEDYFRLDSGEWMF
KGAAYLAIPSKEGGVGTTDGSAANGPIVHANCMSESSVRDLGLSGGIKVVKYFDLNTIYH
SSELVLLYSGCFPNVCHLIITLDFLLGNGGITL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgaataagattattgatttagatttgggttttcttttcttattggagaatccgcgtaga
tcattgatagatccagagaacctgatggcgttagctgagctcacttttaactcgaaccaa
ttatactacttgacgataatcgctggcgagaatgttcatgccgccaaggccattgctgct
actgtctgcgctaatattcttgaggttcccagtgaccaaaagctgccatcactctatctt
ttagatagtattgtaaagaatattgggagagactacattaaatgttttgctgccagatta
ccggaggtgttctgcaagcatataaacaagttgatcctcccttgcatcagagtatgcgac
atctttttggaacttggaaaggggttttccctgttcagactctccaggaaacacaacatc
cagaacggatacactatcacagcgtccaccacaaagtattcatgtaaacccaaagcaaaa
ggtatagtcaatgatatggctgggactttggccaactcaaaggaggagtctgagaagtgt
tttaaacacattcagtgttctcgtatagacatgtttaatgagcctgtttgtgagaagaag
atcattgctgttggtgattatgactatggttctgatcttttacagattcctggcatagaa
gttagaagaaccagggggaatgttactgatcaggggcttgatgcgccttggtttagagct
acaagcagtgttactgagactattcccagccagaggaatggtttcaacgttaagcatgga
tcgcaaaattactccgcatccaaatctgtgaatgctgatcctcgtttacaccgaacacac
aatatttctggtagaaacagcggtgggttgtctagcagctggaaaaactctgaggaggag
gagtttatgtgggagatgcactcttggttgtctgaacatgatgcagccaacttctctaat
aacttgaggaaagattgttggactcctgatgtttcagaaaaaatggattttgaaagtcag
ctccacagacctcaaagcattcatgatgcggtgtcaaggtttgatagagagacttctgct
gatgcattatccactgagcagaaggacaaaccttcttttggccgtcagatttctacttca
tggacagatggtttgcctgctattagttcaagccgttctgagagctattctgctagtctt
ggtgggttgcctactggtgcaagttcttccctggccaggataggaatgagaccacaaaca
ggacccacaggtacttctggaaagcagtgttttcagtctgtaggaactgcatcacctcct
gaacagtctcctatgcgccagcattcaccttcaccttcatttcctgcatgccactcccat
caacagctacagaaattggctgatccagattatcagcaagctctttccctgcctcgggct
gatcccaaaccatctattttttcaggaaagttgaatgttgggtctcatagagactctcct
cagacttctgccccgatttctttgcatcctagccgtcattatcacctttcacagccaccc
ctaccaggctctgtgcaggctgaaccttctggtcagactcagaagtctcttctgtctcag
atctccaaagtagaagcagcctcagcacttggaagtgcattggagcgttctaatccactt
gctattgaaacttcaaaactatcaagtactagtagtctattagctgctgtaatgaagact
ggaatcctctccagcacttcatttactggcaaccttccaactaagatttctcaagatgtt
gggcaaatttcacagcctcctctcccaaattgtcctcctgttttcacaacctcaggcttg
attgacgctgcaatttcatcagatgcaactcatgatgcaatagcaggtgctccgaatagt
tcccaggaaaaagtagaacagctgccactgcctcctggaccaccaccttcatctcttgtt
agtaatgccccatcgcaaacttctgatgctgaaagcaaggatacaaatccaatatctaac
ctcctgagctcattagttgcaaaaggtttgatatctgcatcaaagaaggatgctgcatct
ctcccatctcttccgatgcccaaccaaatacagaagagcccaggagtcgagagtccaagt
gaatcactgaacaagagttcggacattcagagttcatctgatgctcctcgatcctccaca
atgggtgaggtatcatatgctgaacctgctccaaaatgtttagttgccccacatcagtcc
acctcaacagaagtagaaagcttgataggattagaactcaggccagatgtaatcagagaa
tttcattcatctgtgatcgatggattgttggatgaccttccacattgttgcagcttatgt
ggtcttcgacttaagcttcagggacagcttgatagacacttagagtggcatgaaatgaaa
aagactgaattaagaggctctggtagggcattgaggggatggtatgtgaggtcagatgat
tggcttgctggaaagcctgggcaattggtattggattccactgattctctgaacaagttg
gaaaagacaacagaaaaggctgagcgtatggtgcctgcagatgaaaatcagtgtgcatgc
ttgttatgcggcgagctatttgaagattattttaggctggacagtggtgaatggatgttt
aagggagcagcatacttggctatcccatcaaaggagggtggggtgggaactactgatggg
agtgcagccaatggccccattgtgcatgcaaattgcatgtcagaaagttcagttcgggac
ttgggactgtctggtggtattaaagtggtaaagtactttgatttgaatacgatataccat
tcttctgagttagttctgctttattcaggttgttttcccaatgtttgtcatctgatcatc
actcttgacttcttgttaggaaatggaggaataacgctgtaa
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