Gossypium hirsutum (upland cotton): 121216179
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Entry
121216179 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC121216179
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121216179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
121216179
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121216179
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121216179
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121216179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
121216179
NCBI-ProteinID:
XP_040947457
LinkDB
All DBs
Position
D04:complement(38093262..38099564)
Genome browser
AA seq
1042 aa
AA seq
DB search
MENPRRSFDRSREPGLKKPRLTEDLTSNPNIRPFSQRANPVVTASGLRFRSNDSGTNDLI
RGDGGAYEPQPVSHQQQHQQQQELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKAI
AATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKCFAARLSEVFCKAYRQVDPPLHQS
MRHLFGTWKGVFPLQTLQVIEKELGFTPLVNGSSSGNTTSRTDTLSQRPPQSIHVNPKYL
EKQRLQQSSRAKVMVNDMAGTLGNSKESERPDRAHSIAELSYGSVKMNTPGIEVRRTRGN
ITDQGLDAPWFGATGSVTETIPSQRNGFNVKHGSQNYSASKTVNADPRLHRTHSRNSSGL
LSSWKNSEEEEFMWEMHSRLSEHDAANFSDNTRKDCWTPDVSEKMDFESQLQRPQSIHDA
GSRFDRETSADALSTEQKDKPSFGHQISTAWTDGLPATSSSRSESYSASLGGLPTGASSS
LARIGMRPQTGSSHLGTPGFVFLANVASGSTGTSGKQCLKSVGTALPPEQSPMRQHSPSP
SFPACHTHQQLQKLADPDYQQALSLPRADPKPSHFSGKLSVGSHRDSPQTSAPISLLPSR
HHHLSQPPLPDSMQAETSGQTQKPLPSQISKVEAASALGSALECSNPLAIETSELSSTSS
LLAAVMKSGILSSTSFTGNLSTKISQVVGQISQPPLPNCPPAVLTTSGLIDAAISSDATH
DAITATPNSSQKKVEQLPLPPGPPLSSLVSNAPSQTSDAESKDTNPISNLLSSLVAKGLI
SVSKKDAASLPSLQMPNQIQKSPEIERPSESMNKSSDIQSLSDAPRSSTMNEVSYDEPAP
KCSVPPHQSTSTEVESLIGLELRPEVIREFHSSVISGLLDDLPHCCSLCGLRLKLQGRLD
RHLEWHEMTKTESRGSGRALRGWYMRSDDWLAGKPGQLVFDCTGSLNKLEKKTEKAERMV
PADENQCACLLCGELFEDYFSLDRGEWMFKGAAFLTIPSKDGGVGTTDGSAANGPIVHAN
CMSESSVQDLGLSGGIKVEMEE
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcgtagatcatttgatagatcaagagaacctggtttgaaaaaaccacgg
ttaactgaagacctcacttcgaaccctaatatccggcctttttctcaacgagcgaaccca
gttgttaccgcctctggtttgagattccggtccaatgattccggcaccaatgatttgatc
cgtggcgacggtggagcttacgaaccacaaccagtgtcacatcagcagcaacaccagcag
cagcaagagttagttagccagtataagacggcgttagctgagctcacttttaactcgaaa
ccaattattactaacttgacaataatcgctggcgagaatgttcatgccgccaaggccatt
gctgctactgtctgcgctaatattcttgaggttcccagtgaccaaaagctgccatcactc
tatcttttagatagtattgtaaagaatattgggagagactacattaaatgttttgctgcc
aggttatcagaggtgttttgcaaagcatatagacaagttgatcctcccttacatcagagt
atgcgacatctttttggaacttggaaaggggtattccctcttcagactctccaggtgatc
gaaaaggaacttggcttcactcctttggtaaatggttcgtcttcaggaaacacaacatct
agaacggatacactatcacagcgtccaccacaaagcattcatgtaaacccaaagtatcta
gagaagcagcgtcttcaacaatcaagcagggcaaaagttatggtcaatgatatggctggg
actttgggcaactcaaaggagtctgagaggccggatagagcacacagcatagctgaactg
tcatatggatctgttaaaatgaatactcctggcatagaagttagaagaaccagggggaat
attactgatcaggggcttgatgcgccttggtttggagctacaggcagtgttactgagact
attcccagccagaggaatggtttcaacgttaagcatggatctcaaaattactcagcatcc
aaaactgtgaatgctgatcctcgtttacaccgaacacatagtagaaacagcagtgggttg
ttgagcagctggaaaaactctgaggaggaggagtttatgtgggagatgcactctaggttg
tctgaacatgatgcagccaacttctctgataacacgaggaaagattgttggactcctgat
gtttcagaaaaaatggattttgaaagtcagctccaaagacctcaaagcattcatgatgcg
gggtctaggtttgatagagagacttccgctgatgcgttatccactgagcagaaggacaaa
ccttcttttgggcatcagatttctaccgcatggacagatggtttgcctgctactagttca
agccgttctgagagctattctgctagtcttggtgggttgcctactggtgcaagttcttcc
ctggccaggataggaatgcgacctcaaacgggttcatcccatttgggaaccccaggcttt
gtgtttttggcgaatgtggcatcaggatccacaggtacttctggaaagcagtgtttaaag
tccgtaggaactgcattacctcctgaacagtctcctatgcgccagcattcaccttcacct
tcatttcctgcatgccatacccatcaacagctacagaaattggctgatccagattatcag
caagctctttccctgcctcgggctgatccaaaaccatctcatttttcaggaaagttgagt
gttgggtctcatagagactctcctcagacttctgctccgatttctttgcttcctagccgt
catcatcacctttcacagccacccctaccagactccatgcaggctgaaacttctggtcag
actcagaagcctcttccgtctcagatctccaaagtagaagcagcctcagcacttggaagt
gcattggagtgttctaatccacttgctattgaaacttcagaactatcaagtactagtagt
ctattagctgctgtaatgaagagtggaatcctctccagcacttcatttactggcaacctt
tcaactaagatttctcaagttgttgggcaaatttcacagcctcctctcccaaattgtcct
ccagctgttttaacaacctcaggcttgattgatgctgcaatttcatcagatgcaacccat
gatgcaataacagctactccgaatagttcccagaaaaaagtagaacagttgccactgcct
cctggaccaccactttcatctcttgttagtaatgccccatcgcaaacttctgatgccgaa
agcaaggatacaaatccaatatctaaccttctgagctcattagttgcaaaaggtttgata
tctgtatcaaagaaggatgctgcatctctaccatctcttcagatgcccaaccaaatacag
aagagcccggaaattgagaggccaagtgaatcaatgaacaagagttcggacattcagagt
ttgtctgatgctcctcgatcctccacaatgaatgaggtatcctatgatgaacctgctcca
aaatgttcagttcccccacatcagtccacctcaacagaagtagaaagcttgataggatta
gaactcaggccagaggtaatcagagaatttcattcatctgtgatcagtggattgttggat
gaccttccacattgttgcagcttatgtggtcttcgacttaagcttcagggacggcttgat
agacacttagagtggcatgaaatgacaaagactgaatcaagaggttctggtagggcattg
aggggctggtacatgaggtcagatgattggcttgctggaaagcctgggcaattggtattt
gattgcactggttctctgaacaagttggaaaagaaaacagaaaaggctgagcgtatggtg
cctgcagatgaaaatcagtgtgcgtgcttgttatgtggcgagctatttgaagattatttt
agcctggacaggggtgaatggatgtttaagggagcagcattcttgactatcccatcaaag
gatggtggggtgggaactactgatgggagtgcagccaatggccccattgtgcatgcaaat
tgcatgtcagaaagttcagttcaggacttgggactgtctggtggtattaaagtggaaatg
gaagaataa
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integrated database retrieval system
