Gossypium hirsutum (upland cotton): 121216210
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Entry
121216210 CDS
T04793
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121216210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121216210
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121216210
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
121216210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Spore_YtfJ
Motif
Other DBs
NCBI-GeneID:
121216210
NCBI-ProteinID:
XP_040947516
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All DBs
Position
D04:963948..966675
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AA seq
287 aa
AA seq
DB search
MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARVRLGATDVIASV
KAELGKPSALQPDKGNIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGAGA
GIDPTSLVVVEGKVCWDLYIDGLVISSDGNLLDALAAAIKAALSNTGIPKVNVAADATSD
EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRKGHIC
GLTKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEASEEES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactttctgttggagaaaagcatttcatacaaggtggaattgctcaagacctt
cgttcagatggtcgaaaaaggctaacttaccgacccatatatgttgaaactggagttatt
cctcaggcacatgggtcggctagagttaggcttggtgcaactgatgttattgccagtgtc
aaggctgaacttggaaaaccaagtgcattgcaacctgacaaagggaacattgctatatat
gttgattgtagtccaactgcggcaccaatgtttgagggtagagggggtgaggagttgtca
actgagctatcggttgccttgcaacggtgcctcttgggtggtaaaagtggagcaggagct
ggaattgatcccacatctctggtggttgtggaaggaaaagtgtgttgggatctctatatt
gatggtctcgttattagttcagatgggaatttgctagatgcccttgctgctgccattaag
gctgctttaagcaataccggcatccctaaggtcaatgttgcagcagatgcaacaagtgat
gaacaacctgaagtcaacataagtgatgaagagtttctacagtttgacacatctggaatc
cctgtcattgttactctaacaaaggtggggaggcactatatcgttgatgctacatcggaa
gaggaatcacaaatgagctcggctgtttcgatttctgttaaccgaaaaggacacatttgt
gggcttacgaaacgtgggggtgtcggcctagacccgagtattattcttgacatgatttct
gtagcaaaacatgtaagtgaacagctaataaacaagttggattctgagattgctgctgct
gaggcaagtgaagaggaatcatga
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