Gossypium hirsutum (upland cotton): 121216234
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Entry
121216234 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121216234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121216234
03012 Translation factors [BR:
ghi03012
]
121216234
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121216234
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121216234
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121216234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
ABC_tran
AAA_23
Myosin_head
Dicer_dimer
PhoH
Motif
Other DBs
NCBI-GeneID:
121216234
NCBI-ProteinID:
XP_040947621
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All DBs
Position
D04:3149386..3165371
Genome browser
AA seq
1138 aa
AA seq
DB search
MQNPKLRCFLLGFNFTNARVSTLFDSLPFILPNTSSARFYLPLRRRLCGYAVEQFSDDEY
ECDFESHKASSSVANIDEWKWKLGMLSRSENDQEIISRDKRDRRDYEQISNLAKRMGLYS
EMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGLQRRVEGLLQEYLDRLQLNSGKVGE
NSDIANSIDPAEYVNPDENPDSFLDSSVMEKVLQRRSLRLRNMQRAWQESPEGKKMMEFR
KSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIETGRGAFCSIICTQP
RRISAMAVAERVSSERGEPLGETVGYKVRLEGMKGKNTQLLFCTSGILLRRLLSDRNLNG
ITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAELFSNYFGGAPKIHIP
GFTYPVRAHFLEDVLEFTGYKLTSFNQIDDYGQEKMWKMQKQLAPRKRKNQITALVEDAL
NKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRD
QLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKIVLATNMAEASITINDIVF
VVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFSE
YQLPELLRTPLNSLCLQIKSLQVESIGGFLSAALQAPEPLAVQNAIDFLKMVGALDEKEN
LTNLGKFLAMLPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQDKKDLAGTAK
SRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFGYILKE
AGLVDADVAANNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSV
NARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILMLFGGSLSRGAEVGHLKMLQGYID
FFMDSTLAECYLKLKEELDRLIQKKLQDPSVDILQEGKYLMLAVQELVSGDLCEGRFVFG
RASRKPKDSADNSRFTRDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQ
FVGKPMKNKQLAERDAAVEALAWLTHTSDNSRGDDGSPLDVTDNMLKLLGKRRRSKRR
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatccaaagctcagatgtttccttttgggattcaatttcactaacgctagggtc
tccaccttgtttgattcactccctttcatactcccaaatacttcttctgccaggttctat
cttcctctacgacgccgtttatgcgggtacgccgtagagcagttctcagacgatgaatac
gagtgtgatttcgagagtcataaggcgtcgtcttcggttgccaacattgatgaatggaaa
tggaaactcggcatgctgtcacgtagtgaaaatgaccaagaaattatatctagagataaa
agagataggagagactatgaacaaatttccaaccttgctaaaaggatgggactttacagt
gaaatgtatggaaaagtggttgttgcaagcaaggttccacttcctaactataggccagat
ttggatgataaacggccacaacgggaggttgttgtaccattaggcttacaaaggagagtt
gagggtttactgcaagagtaccttgatcggctgcagttaaattctgggaaggttggcgag
aattcagatattgctaattccattgatccggctgaatatgtgaacccagatgagaatcca
gattcatttctggatagttctgttatggaaaaggttcttcaaaggaggagtttgcgatta
cggaacatgcaaagagcttggcaggaatcacctgaaggcaagaagatgatggaatttcgg
aaatctctgcctgcattcaaggaaaaggaaaggcttctgcaagcaattgcacgtaatcag
gtcatagtgatatcgggggagactggatgtggcaagaccactcaacttccacaatacata
ttggagtcagaaatagaaactggtcgtggagcattctgtagcataatttgcacacagcct
cgaagaatatctgctatggcagttgcagaaagagtgtcttcagaaagaggagagccactt
ggggaaacagttggttataaagttcgattagagggaatgaaagggaaaaatacccaactg
cttttttgtaccagtggaattttactcaggcggctgctgagtgaccggaacttgaatggt
ataactcatgtttttgttgatgaaatacatgagcgaggaatgaatgaagattttctactt
attgtgttgaaggatcttcttccacgtcgccaagatttgagattaattttaatgagtgcc
actttgaatgctgagcttttctccaattattttggcggggcacctaaaattcacattcca
ggttttacgtatccggtcagggcacattttctggaagatgttttggaatttactggatat
aagttgacttctttcaatcaaattgatgattatggccaagagaaaatgtggaaaatgcag
aagcaacttgccccacggaaaaggaaaaaccagattactgctcttgtagaggatgctctc
aacaaatcaagctttgagaattatagttcaagagcacgtgattctcttgcatgttggatg
cctgattgcataggattcaatcttatcgaagcagttctatgccatatatgccgaaaggaa
agaccaggtgctgtgctagtatttatgactggttgggaagatatcagttctttgagggat
caacttaaagctcatcctcttttgggagatcctaacagggttctgcttctaacatgccat
ggttctatggcaacatctgaacagaaattaatatttgagaaaccgcctcccaatatacgt
aaaattgttcttgctacaaatatggcagaggcaagcattacaatcaatgatatagttttt
gtggtagattgtggaaaagcaaaagagaccacatacgatgctctcaataatacaccatgt
ttgctaccttcctggatatctcaagcatcagcccggcaaagaaggggtagagctggtcgt
gtgcagccaggcgaatgctaccacctatatccaagatgcgtttatgaagctttctctgag
tatcaacttcctgaacttttgagaactcctttgaattctctctgcttgcaaataaaaagt
ttgcaggttgaaagcattggaggattcttgtcagcagctttgcaagcaccagaaccattg
gctgtccaaaacgccattgattttctaaaaatggttggggcactagatgagaaggaaaat
ctcactaatctaggaaagtttttggcaatgcttcctgtagatcccaagcttgggaaaatg
ctaatcatgggtgccatcttccgttgctttgatcctgtattaacaatagtgtctggactt
agtgtcagggatccttttcttttgcctcaagacaagaaggatttagctgggacagccaag
tctagattttctgcgaaagactacagtgatcacatggctcttgtccgtgcttatgaaggc
tggaaggatgcggaaagagaaggatcagcatatgagtattgttggagaaacttcctgtct
gcacaaactcttcaggctattcattctcttaggaaacaatttggttatattctaaaagaa
gctggcttggtagatgcagatgtagctgcaaacaataaattaagtcacaaccagtctcta
gttcgagctgtcatatgctctggactctttcctggaatagcatctgtagtgcacagagag
acatcaatgtcttttaaaacaatggatgatggccaggttttgttatatgctaattctgtg
aatgcacggtaccaaacaataccttatccgtggctagtgtttggtgaaaaagtaaaggtc
aatacagttttcatacgtgactccactggcgtatcagattctatattaatgctctttggt
ggttctctaagccgtggggcagaggttgggcatttgaaaatgttgcaagggtacattgat
ttcttcatggattctaccttggctgaatgctatttgaagctcaaagaagaacttgataga
cttattcagaagaagcttcaagatcctagtgttgatattctccaggaagggaagtacctt
atgcttgcagttcaagagctagtgtctggagatttatgtgaagggcgatttgtttttggc
cgtgcaagtaggaagcccaaggattctgctgacaacagtagattcacgagggatggaaca
aatccaaagagcttgctacagactttgttaatgagggctgggcactcacctccaaaatac
aagacgaagcatctaaagacaaatgagtttagggcactagtggaattcaaaggaatgcag
tttgtgggaaagcccatgaaaaacaagcagcttgctgagagggatgccgctgtagaagca
ttggcatggttgactcatacctctgacaatagtcgtggtgatgatggttcccctcttgat
gtcactgacaacatgttaaaacttttggggaagcgtcgaagatcaaaaagacgatag
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integrated database retrieval system
