KEGG   Gossypium hirsutum (upland cotton): 121217897
Entry
121217897         CDS       T04793                                 
Name
(RefSeq) cryptochrome-1-like isoform X1
  KO
K12118  cryptochrome 1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    121217897
SSDB
Motif
Pfam: FAD_binding_7 DNA_photolyase Cryptochrome_C
Other DBs
NCBI-GeneID: 121217897
NCBI-ProteinID: XP_040950418
UniProt: A0ABM3A6D3
LinkDB
Position
D05:complement(26300450..26304025)
AA seq 673 aa
MSSIVWFRRDLRVEDNPALLAGVRAGPVFAVFIWAPEEEGHYQPGRVSRWWLKHSLALLD
SSLRSLGTCLITKRSTDSVSSLLQIVKSTGATQLFFNHLYDPISLVRDHRAKEVLMAHGV
AVRSFNADLLYEPWDVNDDNGRPFTTFTAFWEKCLNMPFDPEAPLLPPKRIISGDVLTCT
TDVLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS
PHLHFGEVSVRKVFHLVRMKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSH
ERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGE
YVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKSRLQEALSEM
WQLEAASRAAIENGTEEGLGDSSESVPFAFPQDIQMEENIEPARNNAPATTRRYEDQMVP
SITSSLLRGEHEESSSYLRTSAEDSRAEVPGTVNINREQRRDTLNQAIPETARSLQLNFP
IGLRNAEDSTAESSSSSRRERDGGVVPVWSPPSSSYPEQFIGEESGIGASSSFLQGHPQS
HQIINWRRLSQTG
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgtctagcatagtttggtttagaagggatcttagagttgaagataatccagcactctta
gccggagttagggcaggccctgtttttgcagttttcatatgggcacctgaagaagaaggc
cattatcaacctggaagggtttcaagatggtggcttaaacatagtttggctcttcttgat
tcttctttgaggagcctgggaacttgcctcataacaaagagatcaactgatagtgtttca
tctcttctccagattgttaaatccactggtgccactcagctcttcttcaatcacttgtat
gatcctatatccctggttagggatcatcgagcaaaggaagtattgatggcccatggtgta
gctgttcgatcgttcaatgcggatttgctttatgaaccttgggatgtaaatgatgataat
ggccgccctttcactacttttactgctttctgggaaaaatgccttaacatgccttttgac
cctgaggctcctcttcttccacctaaaagaataatttcaggtgatgtgttaacttgcact
acggatgtgttggtgtttgaagatgaattggagaagggaagcaatgcgcttttagctcga
gcatggtcaccagggtggagcaatgcggataaagctttgacaacgttcattaatggacct
ttaattgagtactcgaagaacagaagaaaagctgatagtgcaacaacttcatttctttcc
ccccatttgcattttggggaggttagtgtccgaaaagtctttcatctcgttcgaatgaag
caggttttatgggctaatgaagggaacaaagctggtgaagagagtgtaaacttgtttctg
aagtcgatcggcttgagggaatactcaagatacttgagttttaaccatccttacagccat
gaaaggcctcttctcggacatcttaagtttttcccttgggttgtcaatgagggttatttc
aaggcatggagacaaggaagaacaggttatccattggtggatgctggcatgagagagtta
tgggccaccggttggctacatgatcgtattcgagttgttgtatcgagtttttttgtcaaa
gttttgcagcttccatggagatggggtatgaagtatttctgggataccctcttggatgca
gatttagaaagcgatgctctcggttggcagtatatatccggtactctcccagatggtcgt
gagttcgaccgcatcgataatccgcagtttgaaggttacaaattcgatccgaatggagaa
tatgtccggcggtggcttccagaacttgcaagactaccaactgattggattcaccatcca
tggaatgctcctgaatctgtactccaagctgctggcatcgagcttgggtcaaattaccct
ctgcctattgtaggaatagatgctgcaaaatccaggttgcaagaagcactttcagagatg
tggcaactagaagcagcttcaagagctgcaattgagaatggaactgaggaaggcctcgga
gactcttccgagtcagtgccatttgcatttccgcaagacatacaaatggaggaaaacatt
gaaccagcaaggaacaatgctccagctacaacacggagatatgaggatcagatggttcct
agcatcacttcttcgttgttgagaggtgaacatgaagagtcttcttcgtatcttagaact
tcagcagaagatagcagagcagaagttccaggaactgtaaatataaatcgagaacaacgg
agagacacattaaaccaagcgattccagaaacagcacgcagcctgcaacttaacttcccg
attgggttgagaaatgctgaggattccactgcagaatcatctagtagtagtaggagagaa
agggatggcggagttgttccagtttggtccccgccatcttcgagttaccccgagcaattt
ataggtgaggaaagtggtatcggtgcaagctcatcttttctacaagggcatccacagtcc
caccaaatcataaattggaggcgattatctcaaaccgggtaa

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