Gossypium hirsutum (upland cotton): 121218260
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Entry
121218260 CDS
T04793
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03410
Base excision repair
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121218260
03410 Base excision repair
121218260
03420 Nucleotide excision repair
121218260
03430 Mismatch repair
121218260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
121218260
03036 Chromosome and associated proteins [BR:
ghi03036
]
121218260
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121218260
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121218260
DNA Replication Termination Factors
ELG1-RFC complex
121218260
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121218260
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121218260
Check point factors
HRAD17(Rad24)-RFC complex
121218260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
Mg_chelatase
AAA_16
AAA_11
AAA_5
AAA_14
SLFN-g3_helicase
AAA_24
AAA_assoc_2
ResIII
nSTAND3
AAA_2
AAA_25
PhoH
AAA_28
AAA_19
AAA_30
AAA_7
DNAX_ATPase_lid
RNA_helicase
Parvo_NS1
IstB_IS21
NPHP3_N
AAA_18
DUF815
bpMoxR
TIP49
DUF3853
NB-ARC
Motif
Other DBs
NCBI-GeneID:
121218260
NCBI-ProteinID:
XP_040951103
LinkDB
All DBs
Position
D06:complement(6951542..6955297)
Genome browser
AA seq
342 aa
AA seq
DB search
MAPVLQSSQPWVEKYRPKQVRDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSDEIMS
SRILHICDQEGLNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSSISSKDLLSVSGVI
PVEVVEALYAACKSGNFDLANKEVNNVIAEGYPVSQMLSQLFDVVVEADDVPDEQKARIC
KSLAEADKRLVDGADEYLQLLDMASNTMRALSNMPQEFSFET
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagtactgcagagctcccaaccttgggttgaaaaatatcggccaaagcaagtg
agagatgtggcacatcaagacgaggttgttcgagttctcaccaacaccctcgagaccgcc
aattgcccgcatatgctcttttacggtccgcctggcactggcaaaaccactaccgctctc
gccattgcccaccagctatttggacctgaactctacaaatctagggtgttggagctaaat
gcaagcgatgaccgtgggatcaatgttgttcgtacaaagatcaaagattttgctgctgtt
gctgtaggatctgctcagcgtcaggggggttatccctgcccaccattcaagatcattatt
cttgatgaagcagattcgatgacagaagatgctcagaatgccttgagacgtaccatggaa
acttactcaaaagttacacgcttctttttcatatgtaactacataagcaggatcatagag
ccacttgcttcaagatgtgccaagttcagattcaagccactttcagatgaaatcatgagc
agtcgtatattgcacatatgtgaccaagaaggcctcaatttagattcagaggcgctttca
acattaagttccatttcacagggtgatcttcgtcgggctattacgtacttgcagggagct
gcacgcctgtttggatcatcaatttcttccaaagatctacttagtgtgtcgggggttatc
cctgtggaagttgttgaagcactttatgctgcatgcaaaagtggtaactttgatttggca
aacaaggaagtcaataatgtaattgcagaaggctatccagtttctcagatgctttctcag
ttatttgatgtggttgttgaggcagatgatgtaccagatgagcagaaagctagaatttgc
aagagtttggctgaagcagataagcgtctagttgatggtgcggatgagtatttgcagctg
ctggatatggccagcaacacaatgcgagctttgtctaacatgcctcaggaattctctttt
gaaacttag
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