KEGG   Gossypium hirsutum (upland cotton): 121218260
Entry
121218260         CDS       T04793                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03410  Base excision repair
ghi03420  Nucleotide excision repair
ghi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    121218260
   03410 Base excision repair
    121218260
   03420 Nucleotide excision repair
    121218260
   03430 Mismatch repair
    121218260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    121218260
   03036 Chromosome and associated proteins [BR:ghi03036]
    121218260
   03400 DNA repair and recombination proteins [BR:ghi03400]
    121218260
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    121218260
  DNA Replication Termination Factors
   ELG1-RFC complex
    121218260
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    121218260
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     121218260
  Check point factors
   HRAD17(Rad24)-RFC complex
    121218260
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N Mg_chelatase AAA_16 AAA_11 AAA_5 AAA_14 SLFN-g3_helicase AAA_24 AAA_assoc_2 ResIII nSTAND3 AAA_2 AAA_25 PhoH AAA_28 AAA_19 AAA_30 AAA_7 DNAX_ATPase_lid RNA_helicase Parvo_NS1 IstB_IS21 NPHP3_N AAA_18 DUF815 bpMoxR TIP49 DUF3853 NB-ARC
Other DBs
NCBI-GeneID: 121218260
NCBI-ProteinID: XP_040951103
LinkDB
Position
D06:complement(6951542..6955297)
AA seq 342 aa
MAPVLQSSQPWVEKYRPKQVRDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSDEIMS
SRILHICDQEGLNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSSISSKDLLSVSGVI
PVEVVEALYAACKSGNFDLANKEVNNVIAEGYPVSQMLSQLFDVVVEADDVPDEQKARIC
KSLAEADKRLVDGADEYLQLLDMASNTMRALSNMPQEFSFET
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccagtactgcagagctcccaaccttgggttgaaaaatatcggccaaagcaagtg
agagatgtggcacatcaagacgaggttgttcgagttctcaccaacaccctcgagaccgcc
aattgcccgcatatgctcttttacggtccgcctggcactggcaaaaccactaccgctctc
gccattgcccaccagctatttggacctgaactctacaaatctagggtgttggagctaaat
gcaagcgatgaccgtgggatcaatgttgttcgtacaaagatcaaagattttgctgctgtt
gctgtaggatctgctcagcgtcaggggggttatccctgcccaccattcaagatcattatt
cttgatgaagcagattcgatgacagaagatgctcagaatgccttgagacgtaccatggaa
acttactcaaaagttacacgcttctttttcatatgtaactacataagcaggatcatagag
ccacttgcttcaagatgtgccaagttcagattcaagccactttcagatgaaatcatgagc
agtcgtatattgcacatatgtgaccaagaaggcctcaatttagattcagaggcgctttca
acattaagttccatttcacagggtgatcttcgtcgggctattacgtacttgcagggagct
gcacgcctgtttggatcatcaatttcttccaaagatctacttagtgtgtcgggggttatc
cctgtggaagttgttgaagcactttatgctgcatgcaaaagtggtaactttgatttggca
aacaaggaagtcaataatgtaattgcagaaggctatccagtttctcagatgctttctcag
ttatttgatgtggttgttgaggcagatgatgtaccagatgagcagaaagctagaatttgc
aagagtttggctgaagcagataagcgtctagttgatggtgcggatgagtatttgcagctg
ctggatatggccagcaacacaatgcgagctttgtctaacatgcctcaggaattctctttt
gaaacttag

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